Bayesian phylogenetic inference under a statistical insertion-deletion model

Bayesian phylogenetic inference under a statistical insertion-deletion model

A central problem in computational biology is the inference of phylogeny given a set of DNA or protein sequences. Currently, this problem is tackled stepwise, with phylogenetic reconstruction dependent on an initial multiple sequence alignment step. However these two steps are fundamentally interdep...

Full description

Bibliographic Details
Main Authors:	Lunter, G, Miklos, I, Drummond, A, Jensen, J, Hein, J
Format:	Conference item
Published:	2003

Similar Items

Accurate reconstruction of insertion-deletion histories by statistical phylogenetics.
by: Westesson, O, et al.
Published: (2012)

Probabilistic phylogenetic inference with insertions and deletions.
by: Elena Rivas, et al.
Published: (2008-09-01)

Bayesian coestimation of phylogeny and sequence alignment
by: Lunter, G, et al.
Published: (2005)

An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
by: Lunter, G, et al.
Published: (2003)

Stochastic models of sequence evolution including insertion-deletion events.
by: Miklós, I, et al.
Published: (2009)

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
by: Satija, R, et al.
Published: (2009)

Phylogenetic inference under recombination using Bayesian stochastic topology selection.
by: Webb, A, et al.
Published: (2009)

Exact Bayesian inference for phylogenetic birth-death models
by: Parag, K, et al.
Published: (2018)

Sex-specific aspects of endogenous retroviral insertion and deletion.
by: Gemmell, P, et al.
Published: (2013)

Bayesian inference in statistical analysis /
by: 292640 Box, George E. P., et al.
Published: (1973)

Inferring B cell specificity for vaccines using a Bayesian mixture model
by: Fowler, A, et al.
Published: (2020)

Bayesian inference of ancestral dates on bacterial phylogenetic trees
by: Didelot, X, et al.
Published: (2018)

Cosmological Parameter Inference with Bayesian Statistics
by: Luis E. Padilla, et al.
Published: (2021-06-01)

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics
by: Mathieu Fourment, et al.
Published: (2019-12-01)

Analysis of word-order universals using Bayesian phylogenetic inference
by: Ho, Pangus
Published: (2013)

Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies.
by: Cosimo Lupo, et al.
Published: (2022-06-01)

Statistical inference : an integrated Bayesian/likelihood approach /
by: 482580 Aitkin, Murray A.
Published: (c201)

File updates under random/arbitrary insertions and deletions
by: Wang, Qiwen, et al.
Published: (2016)

File Updates Under Random/Arbitrary Insertions And Deletions
by: Wang, Qiwen, et al.
Published: (2021)

A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data.
by: O'Brien, J, et al.
Published: (2014)

Bayesian inference of the evolution of a phenotype distribution on a phylogenetic tree
by: Ansari, M, et al.
Published: (2016)

Implementation of Bayesian inference MCMC algorithm in phylogenetic analysis of Dipterocarpaceae family
by: Mirna Yunita, et al.
Published: (2023-01-01)

Bayesian statistical inference of loglogistic model with interval-censored lifetime data
by: Guure, Chris Bambey, et al.
Published: (2015)

Quantifying uncertainty in computational neuroscience with Bayesian statistical inference
by: Cronin, Beau D
Published: (2009)

Investigating selection on viruses: a statistical alignment approach.
by: de Groot, S, et al.
Published: (2008)

Efficient IC statistical modeling and extraction using a Bayesian inference framework
by: Yu, Li, Ph. D. Massachusetts Institute of Technology
Published: (2015)

Universal insertion/deletion-enrich PCR
by: Chi-Kuan Chen, et al.
Published: (2011-12-01)

Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.
by: Satija, R, et al.
Published: (2010)

Calibrated approximate Bayesian inference
by: Xing, H, et al.
Published: (2019)

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes.
by: Montgomery, S, et al.
Published: (2013)

Fully Bayesian tests of neutrality using genealogical summary statistics
by: Drummond Alexei J, et al.
Published: (2008-10-01)

A Bayesian phylogenetic method to estimate unknown sequence ages.
by: Shapiro, B, et al.
Published: (2011)

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.
by: Satija, R, et al.
Published: (2008)

Uncertainty in homology inferences: assessing and improving genomic sequence alignment.
by: Lunter, G, et al.
Published: (2008)

The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation study.
by: Daniel A Dalquen, et al.
Published: (2013-01-01)

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
by: Paraskevis, D, et al.
Published: (2005)

Closure properties of bonded sequential insertion-deletion systems
by: Fong, W. H., et al.
Published: (2021)

Ruler arrays detect genomic insertions and deletions
by: Rolfe, P. Alexander (Philip Alexander), 1979-
Published: (2010)

A phylogenetic codon substitution model for antibody lineages
by: Pybus, O, et al.
Published: (2017)

Bayesian coalescent inference of major human mtDNA haplogroup expansions in Africa
by: Atkinson, Q, et al.
Published: (2009)