The interaction of isopenicillin N synthase with homologated substrate analogues δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa characterised by protein crystallography.
Isopenicillin N synthase (IPNS) converts the linear tripeptide δ-(L-α-aminoadipoyl)-L-cysteinyl-D-valine (ACV) into bicyclic isopenicillin N (IPN) in the central step in the biosynthesis of penicillin and cephalosporin antibiotics. Solution-phase incubation experiments have shown that IPNS turns ove...
| Main Authors: | , , , , |
|---|---|
| Format: | Journal article |
| Sprog: | English |
| Udgivet: |
2013
|
| _version_ | 1826271051288412160 |
|---|---|
| author | Daruzzaman, A Clifton, I Adlington, R Baldwin, J Rutledge, P |
| author_facet | Daruzzaman, A Clifton, I Adlington, R Baldwin, J Rutledge, P |
| author_sort | Daruzzaman, A |
| collection | OXFORD |
| description | Isopenicillin N synthase (IPNS) converts the linear tripeptide δ-(L-α-aminoadipoyl)-L-cysteinyl-D-valine (ACV) into bicyclic isopenicillin N (IPN) in the central step in the biosynthesis of penicillin and cephalosporin antibiotics. Solution-phase incubation experiments have shown that IPNS turns over analogues with a diverse range of side chains in the third (valinyl) position of the substrate, but copes less well with changes in the second (cysteinyl) residue. IPNS thus converts the homologated tripeptides δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-valine (AhCV) and δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-allylglycine (AhCaG) into monocyclic hydroxy-lactam products; this suggests that the additional methylene unit in these substrates induces conformational changes that preclude second ring closure after initial lactam formation. To investigate this and solution-phase results with other tripeptides δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa, we have crystallised AhCV and δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-S-methylcysteine (AhCmC) with IPNS and solved crystal structures for the resulting complexes. The IPNS:Fe(II):AhCV complex shows diffuse electron density for several regions of the substrate, revealing considerable conformational freedom within the active site. The substrate is more clearly resolved in the IPNS:Fe(II):AhCmC complex, by virtue of thioether coordination to iron. AhCmC occupies two distinct conformations, both distorted relative to the natural substrate ACV, in order to accommodate the extra methylene group in the second residue. Attempts to turn these substrates over within crystalline IPNS using hyperbaric oxygenation give rise to product mixtures. |
| first_indexed | 2024-03-06T21:50:31Z |
| format | Journal article |
| id | oxford-uuid:4b1a332c-f9cc-496c-9084-8f502716d631 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-06T21:50:31Z |
| publishDate | 2013 |
| record_format | dspace |
| spelling | oxford-uuid:4b1a332c-f9cc-496c-9084-8f502716d6312022-03-26T15:41:31ZThe interaction of isopenicillin N synthase with homologated substrate analogues δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa characterised by protein crystallography.Journal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:4b1a332c-f9cc-496c-9084-8f502716d631EnglishSymplectic Elements at Oxford2013Daruzzaman, AClifton, IAdlington, RBaldwin, JRutledge, PIsopenicillin N synthase (IPNS) converts the linear tripeptide δ-(L-α-aminoadipoyl)-L-cysteinyl-D-valine (ACV) into bicyclic isopenicillin N (IPN) in the central step in the biosynthesis of penicillin and cephalosporin antibiotics. Solution-phase incubation experiments have shown that IPNS turns over analogues with a diverse range of side chains in the third (valinyl) position of the substrate, but copes less well with changes in the second (cysteinyl) residue. IPNS thus converts the homologated tripeptides δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-valine (AhCV) and δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-allylglycine (AhCaG) into monocyclic hydroxy-lactam products; this suggests that the additional methylene unit in these substrates induces conformational changes that preclude second ring closure after initial lactam formation. To investigate this and solution-phase results with other tripeptides δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa, we have crystallised AhCV and δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-S-methylcysteine (AhCmC) with IPNS and solved crystal structures for the resulting complexes. The IPNS:Fe(II):AhCV complex shows diffuse electron density for several regions of the substrate, revealing considerable conformational freedom within the active site. The substrate is more clearly resolved in the IPNS:Fe(II):AhCmC complex, by virtue of thioether coordination to iron. AhCmC occupies two distinct conformations, both distorted relative to the natural substrate ACV, in order to accommodate the extra methylene group in the second residue. Attempts to turn these substrates over within crystalline IPNS using hyperbaric oxygenation give rise to product mixtures. |
| spellingShingle | Daruzzaman, A Clifton, I Adlington, R Baldwin, J Rutledge, P The interaction of isopenicillin N synthase with homologated substrate analogues δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa characterised by protein crystallography. |
| title | The interaction of isopenicillin N synthase with homologated substrate analogues δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa characterised by protein crystallography. |
| title_full | The interaction of isopenicillin N synthase with homologated substrate analogues δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa characterised by protein crystallography. |
| title_fullStr | The interaction of isopenicillin N synthase with homologated substrate analogues δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa characterised by protein crystallography. |
| title_full_unstemmed | The interaction of isopenicillin N synthase with homologated substrate analogues δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa characterised by protein crystallography. |
| title_short | The interaction of isopenicillin N synthase with homologated substrate analogues δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa characterised by protein crystallography. |
| title_sort | interaction of isopenicillin n synthase with homologated substrate analogues δ l α aminoadipoyl l homocysteinyl d xaa characterised by protein crystallography |
| work_keys_str_mv | AT daruzzamana theinteractionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT cliftoni theinteractionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT adlingtonr theinteractionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT baldwinj theinteractionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT rutledgep theinteractionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT daruzzamana interactionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT cliftoni interactionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT adlingtonr interactionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT baldwinj interactionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography AT rutledgep interactionofisopenicillinnsynthasewithhomologatedsubstrateanaloguesdlaaminoadipoyllhomocysteinyldxaacharacterisedbyproteincrystallography |