The clinical features and genomic epidemiology of carbapenem-resistant Acinetobacter baumannii infections at a tertiary hospital in Vietnam

<p><strong>Objectives:&nbsp;</strong>To characterise the clinical features of&nbsp;<em>Acinetobacter baumannii</em>&nbsp;infections and investigate the phylogenetic structure and transmission dynamics of&nbsp;<em>A. baumannii</em>&nbsp;in...

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Main Authors: Diep, DTH, Tuan, HM, Ngoc, KM, Vinh, C, Dung, TTN, Phat, VV, Nguyen, Q, Tam, DTH, Nien, LV, Duyen, BTH, Phung, CT, Bac, NH, Tuan, TD, Thwaites, G, Rabaa, MA, Pham, DT
Format: Journal article
Language:English
Published: Elsevier 2023
Description
Summary:<p><strong>Objectives:&nbsp;</strong>To characterise the clinical features of&nbsp;<em>Acinetobacter baumannii</em>&nbsp;infections and investigate the phylogenetic structure and transmission dynamics of&nbsp;<em>A. baumannii</em>&nbsp;in Vietnam.</p> <p><strong>Methods:</strong>&nbsp;Between 2019 and 2020, a surveillance of&nbsp;<em>A. baumannii</em>&nbsp;(AB) infections was conducted at a tertiary hospital in Ho Chi Minh City, Vietnam. Risk factors for in-hospital mortality were analysed using logistic regressions. Whole-genome sequence data were used to characterise genomic species, sequence types (STs), antimicrobial resistance genes, surface antigens, and phylogenetic relatedness of AB isolates.</p> <p><strong>Results:</strong>&nbsp;Eighty-four patients with AB infections were enrolled in the study, 96% of whom were hospital-acquired. Half of the AB isolates were identified from ICU-admitted patients, while the remaining isolates were from non-ICU patients. The overall in-hospital mortality was 56%, with associated risk factors including advanced age, ICU stay, exposure to mechanical ventilation/central venous catheterization, pneumonia as source of AB infection, prior use of linezolid/aminoglycosides, and AB treatment with colistin-based therapy. Nearly 91% of isolates were carbapenem-resistant; 92% were multidrug-resistant; and 6% were colistin-resistant. ST2, ST571, and ST16 were the three dominant carbapenem-resistant&nbsp;<em>A. baumannii</em>&nbsp;(CRAB) genotypes, exhibiting distinct AMR gene profiles. Phylogenetic analysis of CRAB ST2 isolates together with previously published ST2 collection provided evidence of intra- and inter-hospital transmission of this clone.</p> <p><strong>Conclusions:</strong>&nbsp;Our study highlights a high prevalence of carbapenem resistance and multidrug resistance in&nbsp;<em>A. baumannii</em>&nbsp;and elucidates the spread of CRAB within and between hospitals. Strengthening infection control measures and routine genomic surveillance are crucial to reducing the spread of CRAB and detecting novel pan-drug-resistant variants in a timely fashion.</p>