CGAT: computational genomics analysis toolkit.
Computational genomics seeks to draw biological inferences from genomic datasets, often by integrating and contextualizing next-generation sequencing data. CGAT provides an extensive suite of tools designed to assist in the analysis of genome scale data from a range of standard file formats. The too...
| Main Authors: | , , , , , , , , , |
|---|---|
| Format: | Journal article |
| Language: | English |
| Published: |
Oxford University Press
2014
|
| _version_ | 1826271939491004416 |
|---|---|
| author | Sims, D Ilott, N Sansom, S Sudbery, I Johnson, J Fawcett, K Berlanga-Taylor, A Luna-Valero, S Ponting, C Heger, A |
| author_facet | Sims, D Ilott, N Sansom, S Sudbery, I Johnson, J Fawcett, K Berlanga-Taylor, A Luna-Valero, S Ponting, C Heger, A |
| author_sort | Sims, D |
| collection | OXFORD |
| description | Computational genomics seeks to draw biological inferences from genomic datasets, often by integrating and contextualizing next-generation sequencing data. CGAT provides an extensive suite of tools designed to assist in the analysis of genome scale data from a range of standard file formats. The toolkit enables filtering, comparison, conversion, summarization and annotation of genomic intervals, gene sets and sequences. The tools can both be run from the Unix command line and installed into visual workflow builders, such as Galaxy. |
| first_indexed | 2024-03-06T22:04:39Z |
| format | Journal article |
| id | oxford-uuid:4fbb9951-c867-4c31-896c-14f6139ba996 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-06T22:04:39Z |
| publishDate | 2014 |
| publisher | Oxford University Press |
| record_format | dspace |
| spelling | oxford-uuid:4fbb9951-c867-4c31-896c-14f6139ba9962022-03-26T16:09:12ZCGAT: computational genomics analysis toolkit.Journal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:4fbb9951-c867-4c31-896c-14f6139ba996EnglishSymplectic Elements at OxfordOxford University Press2014Sims, DIlott, NSansom, SSudbery, IJohnson, JFawcett, KBerlanga-Taylor, ALuna-Valero, SPonting, CHeger, AComputational genomics seeks to draw biological inferences from genomic datasets, often by integrating and contextualizing next-generation sequencing data. CGAT provides an extensive suite of tools designed to assist in the analysis of genome scale data from a range of standard file formats. The toolkit enables filtering, comparison, conversion, summarization and annotation of genomic intervals, gene sets and sequences. The tools can both be run from the Unix command line and installed into visual workflow builders, such as Galaxy. |
| spellingShingle | Sims, D Ilott, N Sansom, S Sudbery, I Johnson, J Fawcett, K Berlanga-Taylor, A Luna-Valero, S Ponting, C Heger, A CGAT: computational genomics analysis toolkit. |
| title | CGAT: computational genomics analysis toolkit. |
| title_full | CGAT: computational genomics analysis toolkit. |
| title_fullStr | CGAT: computational genomics analysis toolkit. |
| title_full_unstemmed | CGAT: computational genomics analysis toolkit. |
| title_short | CGAT: computational genomics analysis toolkit. |
| title_sort | cgat computational genomics analysis toolkit |
| work_keys_str_mv | AT simsd cgatcomputationalgenomicsanalysistoolkit AT ilottn cgatcomputationalgenomicsanalysistoolkit AT sansoms cgatcomputationalgenomicsanalysistoolkit AT sudberyi cgatcomputationalgenomicsanalysistoolkit AT johnsonj cgatcomputationalgenomicsanalysistoolkit AT fawcettk cgatcomputationalgenomicsanalysistoolkit AT berlangataylora cgatcomputationalgenomicsanalysistoolkit AT lunavaleros cgatcomputationalgenomicsanalysistoolkit AT pontingc cgatcomputationalgenomicsanalysistoolkit AT hegera cgatcomputationalgenomicsanalysistoolkit |