CGAT: computational genomics analysis toolkit.

CGAT: computational genomics analysis toolkit.

Computational genomics seeks to draw biological inferences from genomic datasets, often by integrating and contextualizing next-generation sequencing data. CGAT provides an extensive suite of tools designed to assist in the analysis of genome scale data from a range of standard file formats. The too...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Sims, D, Ilott, N, Sansom, S, Sudbery, I, Johnson, J, Fawcett, K, Berlanga-Taylor, A, Luna-Valero, S, Ponting, C, Heger, A
Fformat:	Journal article
Iaith:	English
Cyhoeddwyd:	Oxford University Press 2014

Eitemau Tebyg

CGAT-core: a python framework for building scalable, reproducible computational biology workflows
gan: Cribbs, AP, et al.
Cyhoeddwyd: (2019)

Sequencing depth and coverage: key considerations in genomic analyses.
gan: Sims, D, et al.
Cyhoeddwyd: (2014)

Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes.
gan: Heger, A, et al.
Cyhoeddwyd: (2007)

UMI-tools: Modelling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy.
gan: Smith, T, et al.
Cyhoeddwyd: (2017)

Predicting long non-coding RNAs using RNA sequencing.
gan: Ilott, N, et al.
Cyhoeddwyd: (2013)

Predicting long non-coding RNAs using RNA sequencing
gan: Ilott, N, et al.
Cyhoeddwyd: (2013)

An integrated toolkit for human microglia functional genomics
gan: Imdadul Haq, et al.
Cyhoeddwyd: (2024-04-01)

Genomic response to vitamin D supplementation in the setting of a randomized, placebo-controlled trial
gan: Berlanga-Taylor, A, et al.
Cyhoeddwyd: (2018)

Mobile computing with the Rover Toolkit
gan: Joseph, Anthony Douglas, 1966-
Cyhoeddwyd: (2009)

Bigelow’s computer repair toolkit /
gan: 219399 Bigelow, Stephen J.
Cyhoeddwyd: (c199)

Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia.
gan: Sansom, S, et al.
Cyhoeddwyd: (2014)

A modular cloning toolkit for genome editing in plants
gan: Hahn, F, et al.
Cyhoeddwyd: (2020)

Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy.
gan: Rajan, P, et al.
Cyhoeddwyd: (2014)

Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy
gan: Rajan, P, et al.
Cyhoeddwyd: (2014)

Incident response : computer forensics toolkit /
gan: 290500 Schweitzer, Douglas
Cyhoeddwyd: (2003)

GAT: a simulation framework for testing the association of genomic intervals.
gan: Heger, A, et al.
Cyhoeddwyd: (2013)

GAT: a simulation framework for testing the association of genomic intervals
gan: Heger, A, et al.
Cyhoeddwyd: (2013)

JCVI: A versatile toolkit for comparative genomics analysis
gan: Haibao Tang, et al.
Cyhoeddwyd: (2024-08-01)

A genomic toolkit for winged bean Psophocarpus tetragonolobus
gan: Wai Kuan Ho, et al.
Cyhoeddwyd: (2024-03-01)

Comparative genomics of vertebrates
gan: Ponting, C, et al.
Cyhoeddwyd: (2005)

Vision on tap : an online computer vision toolkit
gan: Chiu, Kevin (Kevin Geeyoung)
Cyhoeddwyd: (2011)

Bigelow’s computer repair toolkit [electronic resource] /
gan: 219399 Bigelow, Stephen J.
Cyhoeddwyd: (c199)

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs.
gan: Swain, M, et al.
Cyhoeddwyd: (2012)

OPTIC: orthologous and paralogous transcripts in clades
gan: Heger, A, et al.
Cyhoeddwyd: (2009)

Variable strength of translational selection among 12 Drosophila species.
gan: Heger, A, et al.
Cyhoeddwyd: (2007)

OPTIC: Orthologous and paralogous transcripts in clades
gan: Heger, A, et al.
Cyhoeddwyd: (2008)

OPTIC: orthologous and paralogous transcripts in clades.
gan: Heger, A, et al.
Cyhoeddwyd: (2008)

The PROSPER toolkit
gan: Dennis, L, et al.
Cyhoeddwyd: (2003)

The PROSPER Toolkit
gan: Dennis, L, et al.
Cyhoeddwyd: (2000)

Partial Evaluation for Scientific Computing: The Supercomputer Toolkit Experience
gan: Berlin, Andrew, et al.
Cyhoeddwyd: (2004)

Incident response : computer forensics toolkit [compact disc] /
gan: 290500 Schweitzer, Douglas
Cyhoeddwyd: (2003)

The Supercomputer Toolkit: A General Framework for Special-purpose Computing
gan: Abelson, Harold, et al.
Cyhoeddwyd: (2004)

Accurate estimation of gene evolutionary rates using XRATE, with an application to transmembrane proteins.
gan: Heger, A, et al.
Cyhoeddwyd: (2009)

Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling
gan: Ilott, N, et al.
Cyhoeddwyd: (2016)

Growing Greener: creating a new values-based environmental engagement toolkit for SME intermediaries
gan: Hampton, S, et al.
Cyhoeddwyd: (2019)

Reshaping the Landscape of the Genome: Toolkits for Precise DNA Methylation Manipulation and Beyond
gan: Chenyou Zhu, et al.
Cyhoeddwyd: (2023-12-01)

Genome and epigenome engineering CRISPR toolkit for in vivo modulation of cis-regulatory interactions and gene expression in the chicken embryo
gan: Williams, R, et al.
Cyhoeddwyd: (2018)

User Toolkits for Innovation
gan: von Hippel, Eric A.
Cyhoeddwyd: (2012)

The change management toolkit /
gan: 248668 Carnall, Colin A.
Cyhoeddwyd: (2003)

The gesture recognition toolkit
gan: Gillian, Nicholas, et al.
Cyhoeddwyd: (2016)