Identification of Salmonella for public health surveillance using whole genome sequencing

Identification of Salmonella for public health surveillance using whole genome sequencing

<p style="text-align:justify;"> In April 2015, Public Health England implemented whole genome sequencing (WGS) as a routine typing tool for public health surveillance of Salmonella, adopting a multilocus sequence typing (MLST) approach as a replacement for traditional serotyping. T...

Full description

Bibliographic Details
Main Authors:	Ashton, P, Nair, S, Peters, T, Bale, J, Powell, D, Painset, A, Tewolde, R, Schaefer, U, Jenkins, C, Dallman, T, De Pinna, E, Grant, K
Format:	Journal article
Language:	English
Published:	PeerJ 2016

Similar Items

Identification of Salmonella for public health surveillance using whole genome sequencing
by: Philip M. Ashton, et al.
Published: (2016-04-01)

Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
by: Ashton, P, et al.
Published: (2017)

Evaluation of Genomic Typing Methods in the <i>Salmonella</i> Reference Laboratory in Public Health, England, 2012–2020
by: Marie Anne Chattaway, et al.
Published: (2023-01-01)

Insight into Shiga toxin genes encoded by Escherichia coli O157 from whole genome sequencing
by: Philip M. Ashton, et al.
Published: (2015-02-01)

Whole Genome Sequencing of an Unusual Serotype of Shiga Toxin–producing Escherichia coli
by: Tim Dallman, et al.
Published: (2013-08-01)

Salmonella Serotyping Using Whole Genome Sequencing
by: George M. Ibrahim, et al.
Published: (2018-12-01)

MOST: a modified MLST typing tool based on short read sequencing
by: Tewolde, R, et al.
Published: (2016)

Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing.
by: Guojie Cao, et al.
Published: (2013-01-01)

Whole genome sequencing of carbapenemase-producing Proteus mirabilis with Salmonella Genomic Island, Korea
by: Jinkyung Yu, et al.
Published: (2024-03-01)

Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA
by: Molly M. Leeper, et al.
Published: (2023-09-01)

The use of whole genome sequencing for the analysis of isolates belonging to the bacterial genus Salmonella
by: Pearce, M
Published: (2018)

Development and validation of a random forest algorithm for source attribution of animal and human Salmonella Typhimurium and monophasic variants of S. Typhimurium isolates in England and Wales utilising whole genome sequencing data
by: Jaromir Guzinski, et al.
Published: (2024-03-01)

MOST: a modified MLST typing tool based on short read sequencing
by: Rediat Tewolde, et al.
Published: (2016-08-01)

Whole genome sequencing for M/XDR tuberculosis surveillance and for resistance testing
by: Walker, T, et al.
Published: (2016)

Multi-platform whole genome sequencing for tuberculosis clinical and surveillance applications
by: Joseph Thorpe, et al.
Published: (2024-03-01)

Real-time whole-genome sequencing surveillance for outbreak detection and intervention
by: Alexander Sundermann, et al.
Published: (2023-06-01)

Prolonged bacterial carriage and hospital transmission detected by whole genome sequencing surveillance
by: Alexander J. Sundermann, et al.
Published: (2024-01-01)

Whole-genome sequencing for surveillance of antimicrobial resistance in Ecuador: present and future implications
by: William Calero-Cáceres, et al.
Published: (2023-04-01)

Research and implementation of a whole-genome sequencing surveillance system for outbreak detection
by: Alexander Sundermann, et al.
Published: (2022-07-01)

Antimicrobial resistance surveillance with whole genome sequencing in Africa: It’s (about) time
by: Hajo Grundmann, et al.
Published: (2018-12-01)

Whole-genome sequencing for routine pathogen surveillance in public health: A population snapshot of invasive Staphylococcus aureus in Europe
by: Aanensen, DM, et al.
Published: (2016)

Whole-Genome Sequencing of Salmonella Mississippi and Typhimurium Definitive Type 160, Australia and New Zealand
by: Laura Ford, et al.
Published: (2019-09-01)

Genomic Diversity of Hospital-Acquired Infections Revealed through Prospective Whole-Genome Sequencing-Based Surveillance
by: Mustapha M. Mustapha, et al.
Published: (2022-06-01)

Whole genome sequencing for surveillance of tuberculosis drug resistance and determination of resistant level in China
by: Liu, D, et al.
Published: (2021)

Impact of discontinuation of contact precautions on surveillance- and whole-genome sequencing-defined MRSA infections
by: Sharon Karunakaran, et al.
Published: (2023-06-01)

Whole-Genome-Based Survey for Polyphyletic Serovars of <i>Salmonella enterica</i> subsp. <i>enterica</i> Provides New Insights into Public Health Surveillance
by: Zhiqiu Yin, et al.
Published: (2020-07-01)

Comparing Multiple Locus Variable-Number Tandem Repeat Analyses with Whole-Genome Sequencing as Typing Method for Salmonella Enteritidis Surveillance in The Netherlands, January 2019 to March 2020
by: Roan Pijnacker, et al.
Published: (2022-10-01)

Whole Genome Sequencing Analysis of <i>Salmonella enterica</i> Serovar Typhi: History and Current Approaches
by: Wan Ratmaazila Wan Wan Makhtar, et al.
Published: (2021-10-01)

Whole-genome sequencing of antimicrobial-resistant Salmonella enterica isolates from a Cairina moschata carcass
by: Trung Thanh Nguyen, et al.
Published: (2023-04-01)

Whole genome sequencing of Salmonella enterica serovars isolated from humans, animals, and the environment in Lagos, Nigeria
by: Kabiru Olusegun Akinyemi, et al.
Published: (2023-06-01)

Whole-genome sequencing of multidrug resistance Salmonella Typhi clinical strains isolated from Balochistan, Pakistan
by: Sareen Fatima, et al.
Published: (2023-05-01)

Whole-genome sequencing of nontyphoidal Salmonella enterica isolates obtained from various meat types in Ghana
by: Tay, Moon Yue Feng, et al.
Published: (2019)

Strengthening the genomic surveillance of Francisella tularensis by using culture-free whole-genome sequencing from biological samples
by: Joana Isidro, et al.
Published: (2024-01-01)

Advancing animal tuberculosis surveillance using culture-independent long-read whole-genome sequencing
by: Giovanni Ghielmetti, et al.
Published: (2023-11-01)

Rapid geographical source attribution of Salmonella enterica serovar Enteritidis genomes using hierarchical machine learning
by: Sion C Bayliss, et al.
Published: (2023-04-01)

An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella
by: James B. Pettengill, et al.
Published: (2014-10-01)

Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics
by: Eby M. Sim, et al.
Published: (2023-01-01)

Analysis of nontyphoidal Salmonella clinical isolates antibiotic resistance based on whole genome sequencing in Jiangxi Province in 2018
by: Xingyong YOU, et al.
Published: (2020-09-01)

Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics.
by: Eby M Sim, et al.
Published: (2023-01-01)

Characterizing the Genetic Diversity of Salmonella Isolated from U.S. Raw Inshell Pistachios Using Whole Genome Sequencing
by: Erika M. Estrada, et al.
Published: (2023-10-01)