OPTIC: orthologous and paralogous transcripts in clades
The genome sequences of a large number of metazoan species are now known. As multiple closely related genomes are sequenced, comparative studies that previously focussed on only pairs of genomes can now be extended over whole clades. The <strong>o</strong>rthologous and <strong>p&l...
| Príomhchruthaitheoirí: | , |
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| Formáid: | Journal article |
| Teanga: | English |
| Foilsithe / Cruthaithe: |
Oxford University Press
2009
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| Ábhair: |
| _version_ | 1826275254305030144 |
|---|---|
| author | Heger, A Ponting, C |
| author_facet | Heger, A Ponting, C |
| author_sort | Heger, A |
| collection | OXFORD |
| description | The genome sequences of a large number of metazoan species are now known. As multiple closely related genomes are sequenced, comparative studies that previously focussed on only pairs of genomes can now be extended over whole clades. The <strong>o</strong>rthologous and <strong>p</strong>aralogous <strong>t</strong>ranscripts <strong>i</strong>n <strong>c</strong>lades (OPTIC) database currently provides sets of gene predictions and orthology assignments for three clades: (i) amniotes, including human, dog, mouse, opossum, platypus and chicken (17443 orthologous groups); (ii) a <em>Drosophila</em> clade of 12 species (12889 orthologous groups) and (iii) a nematode clade of four species (13626 orthologous groups). Gene predictions, multiple alignments and phylogenetic trees are freely available to browse and download from http://genserve.anat.ox.ac.uk/clades. Further genomes and clades will be added in the future. |
| first_indexed | 2024-03-06T22:55:55Z |
| format | Journal article |
| id | oxford-uuid:605b97a8-e373-4c1b-8c61-c8afce4a9177 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-06T22:55:55Z |
| publishDate | 2009 |
| publisher | Oxford University Press |
| record_format | dspace |
| spelling | oxford-uuid:605b97a8-e373-4c1b-8c61-c8afce4a91772022-03-26T17:53:02ZOPTIC: orthologous and paralogous transcripts in cladesJournal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:605b97a8-e373-4c1b-8c61-c8afce4a9177Genetics (medical sciences)EnglishOxford University Research Archive - ValetOxford University Press2009Heger, APonting, CThe genome sequences of a large number of metazoan species are now known. As multiple closely related genomes are sequenced, comparative studies that previously focussed on only pairs of genomes can now be extended over whole clades. The <strong>o</strong>rthologous and <strong>p</strong>aralogous <strong>t</strong>ranscripts <strong>i</strong>n <strong>c</strong>lades (OPTIC) database currently provides sets of gene predictions and orthology assignments for three clades: (i) amniotes, including human, dog, mouse, opossum, platypus and chicken (17443 orthologous groups); (ii) a <em>Drosophila</em> clade of 12 species (12889 orthologous groups) and (iii) a nematode clade of four species (13626 orthologous groups). Gene predictions, multiple alignments and phylogenetic trees are freely available to browse and download from http://genserve.anat.ox.ac.uk/clades. Further genomes and clades will be added in the future. |
| spellingShingle | Genetics (medical sciences) Heger, A Ponting, C OPTIC: orthologous and paralogous transcripts in clades |
| title | OPTIC: orthologous and paralogous transcripts in clades |
| title_full | OPTIC: orthologous and paralogous transcripts in clades |
| title_fullStr | OPTIC: orthologous and paralogous transcripts in clades |
| title_full_unstemmed | OPTIC: orthologous and paralogous transcripts in clades |
| title_short | OPTIC: orthologous and paralogous transcripts in clades |
| title_sort | optic orthologous and paralogous transcripts in clades |
| topic | Genetics (medical sciences) |
| work_keys_str_mv | AT hegera opticorthologousandparalogoustranscriptsinclades AT pontingc opticorthologousandparalogoustranscriptsinclades |