3D histology reconstruction with external blockface reference. Full mouse heart, 600 sections
Mouse heart Picro sirius red histology was reconstructed using the Transformation Diffusion Reconstruction (TDR) method in (Casero et al. 2017). <br><br> Histology slices were downsampled by a factor of x24.6 down to blockface pixel size, and pre-aligned to the blockface using rigid reg...
| Những tác giả chính: | , , , , , |
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| Định dạng: | Dataset |
| Ngôn ngữ: | English |
| Được phát hành: |
Institute for Experimental Cardiovascular Medicine, University of Freiburg; Institute of Biomedical Engineering, Department of Engineering Science and Wellcome Trust Centre for Human Genetics, University of Oxford; Heart Science Centre, National Lung and Heart Institute, Imperial College London
2017
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| Những chủ đề: |
| _version_ | 1826317203352322048 |
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| author | Casero, R Siedlecka, U Jones, E Gruscheski, L Quinn, T Kohl, P |
| author2 | Casero, R |
| author_facet | Casero, R Casero, R Siedlecka, U Jones, E Gruscheski, L Quinn, T Kohl, P |
| author_sort | Casero, R |
| collection | OXFORD |
| description | Mouse heart Picro sirius red histology was reconstructed using the Transformation Diffusion Reconstruction (TDR) method in (Casero et al. 2017).
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Histology slices were downsampled by a factor of x24.6 down to blockface pixel size, and pre-aligned to the blockface using rigid registration, followed by rigid TDR refinement (M=150 stack sweeps) and B-spline ATDR refinement (M=80). We then applied the low resolution refinement to the original histology downsampled only by a factor of 2. In this high-resolution stack we applied further B-spline ATDR refinement (M=10). R. Casero, U. Siedlecka, M. Gibb, J.E. Schneider, P. Kohl, V. Grau. "Transformation Diffusion Reconstruction of Three-Dimensional Histology Volumes from Two-Dimensional Image Stacks". Medical Image Analysis, 2017 This is the reconstruction presented in the (Casero et al. 2017) paper that introduced the Transformation Diffusion Reconstruction method. R. Casero, U. Siedlecka, M. Gibb, J.E. Schneider, P. Kohl, V. Grau. "Transformation Diffusion Reconstruction of Three-Dimensional Histology Volumes from Two-Dimensional Image Stacks". Medical Image Analysis, 2017. |
| first_indexed | 2024-03-06T23:47:27Z |
| format | Dataset |
| id | oxford-uuid:716fe2ef-f965-40ff-8da4-8a5ad48f4aea |
| institution | University of Oxford |
| language | English |
| last_indexed | 2025-02-19T04:34:47Z |
| publishDate | 2017 |
| publisher | Institute for Experimental Cardiovascular Medicine, University of Freiburg; Institute of Biomedical Engineering, Department of Engineering Science and Wellcome Trust Centre for Human Genetics, University of Oxford; Heart Science Centre, National Lung and Heart Institute, Imperial College London |
| record_format | dspace |
| spelling | oxford-uuid:716fe2ef-f965-40ff-8da4-8a5ad48f4aea2025-01-29T13:49:18Z3D histology reconstruction with external blockface reference. Full mouse heart, 600 sectionsDatasethttp://purl.org/coar/resource_type/c_ddb1uuid:716fe2ef-f965-40ff-8da4-8a5ad48f4aeaReconstructionBloackfaceAnatomyHistologyHeartPhysiologyEnglishORA DepositInstitute for Experimental Cardiovascular Medicine, University of Freiburg; Institute of Biomedical Engineering, Department of Engineering Science and Wellcome Trust Centre for Human Genetics, University of Oxford; Heart Science Centre, National Lung and Heart Institute, Imperial College London2017Casero, RSiedlecka, UJones, EGruscheski, LQuinn, TKohl, PCasero, RKohl, PSchneider, JGrau, VMouse heart Picro sirius red histology was reconstructed using the Transformation Diffusion Reconstruction (TDR) method in (Casero et al. 2017). <br><br> Histology slices were downsampled by a factor of x24.6 down to blockface pixel size, and pre-aligned to the blockface using rigid registration, followed by rigid TDR refinement (M=150 stack sweeps) and B-spline ATDR refinement (M=80). We then applied the low resolution refinement to the original histology downsampled only by a factor of 2. In this high-resolution stack we applied further B-spline ATDR refinement (M=10). R. Casero, U. Siedlecka, M. Gibb, J.E. Schneider, P. Kohl, V. Grau. "Transformation Diffusion Reconstruction of Three-Dimensional Histology Volumes from Two-Dimensional Image Stacks". Medical Image Analysis, 2017 This is the reconstruction presented in the (Casero et al. 2017) paper that introduced the Transformation Diffusion Reconstruction method. R. Casero, U. Siedlecka, M. Gibb, J.E. Schneider, P. Kohl, V. Grau. "Transformation Diffusion Reconstruction of Three-Dimensional Histology Volumes from Two-Dimensional Image Stacks". Medical Image Analysis, 2017. |
| spellingShingle | Reconstruction Bloackface Anatomy Histology Heart Physiology Casero, R Siedlecka, U Jones, E Gruscheski, L Quinn, T Kohl, P 3D histology reconstruction with external blockface reference. Full mouse heart, 600 sections |
| title | 3D histology reconstruction with external blockface reference. Full mouse heart, 600 sections |
| title_full | 3D histology reconstruction with external blockface reference. Full mouse heart, 600 sections |
| title_fullStr | 3D histology reconstruction with external blockface reference. Full mouse heart, 600 sections |
| title_full_unstemmed | 3D histology reconstruction with external blockface reference. Full mouse heart, 600 sections |
| title_short | 3D histology reconstruction with external blockface reference. Full mouse heart, 600 sections |
| title_sort | 3d histology reconstruction with external blockface reference full mouse heart 600 sections |
| topic | Reconstruction Bloackface Anatomy Histology Heart Physiology |
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