Development of nanopore-based whole genome sequencing to allow Mycobacterium diagnosis directly from patient samples

Development of nanopore-based whole genome sequencing to allow Mycobacterium diagnosis directly from patient samples

Xehetasun bibliografikoak
Egile Nagusiak:	Pankhurst, L, Bradley, P, Votintseva, A, del Ojo Elias, C, Sanderson, N, Morgan, M, Walker, A, Peto, T, Crook, D, Iqbal, Z
Formatua:	Conference item
Argitaratua:	European Society of Clinical Microbiology and Infectious Diseases 2017

Antzeko izenburuak

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples
nork: Iqbal, Z, et al.
Argitaratua: (2017)

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples
nork: Votintseva, A, et al.
Argitaratua: (2017)

Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures
nork: Votintseva, A, et al.
Argitaratua: (2015)

Whole-genome sequencing for predicting clarithromycin resistance in Mycobacterium abscessus
nork: Lipworth, S, et al.
Argitaratua: (2018)

Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples
nork: Lewandowski, K, et al.
Argitaratua: (2019)

Control of artefactual variation in reported inter-sample relatedness during clinical use of a Mycobacterium tuberculosis sequencing pipeline
nork: Wyllie, D, et al.
Argitaratua: (2018)

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission.
nork: Eyre, D, et al.
Argitaratua: (2013)

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission
nork: Eyre, D, et al.
Argitaratua: (2013)

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study.
nork: Walker, T, et al.
Argitaratua: (2015)

DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing
nork: Anson, LW, et al.
Argitaratua: (2018)

DNA thermo-protection facilitates whole genome sequencing of Mycobacteria direct from clinical samples
nork: George, S, et al.
Argitaratua: (2020)

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data.
nork: Stoesser, N, et al.
Argitaratua: (2013)

The implementation of whole-genome sequencing for Mycobacterium tuberculosis in Vietnam
nork: Huong, DT, et al.
Argitaratua: (2024)

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: An observational study
nork: Walker, T, et al.
Argitaratua: (2014)

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
nork: George, S, et al.
Argitaratua: (2017)

Whole-genome sequencing demonstrates that fidaxomicin is superior to vancomycin for preventing reinfection and relapse of infection with Clostridium difficile
nork: Eyre, D, et al.
Argitaratua: (2013)

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study.
nork: Walker, T, et al.
Argitaratua: (2014)

Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing.
nork: Walker, T, et al.
Argitaratua: (2013)

Contact investigations for outbreaks of Mycobacterium tuberculosis: Advances through whole genome sequencing
nork: Walker, T, et al.
Argitaratua: (2013)

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
nork: Bradley, P, et al.
Argitaratua: (2015)

Whole genome sequencing of Mycobacterium tuberculosis
nork: Cabibbe, A, et al.
Argitaratua: (2018)

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission.
nork: David W Eyre, et al.
Argitaratua: (2013-01-01)

Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
nork: Bradley, P, et al.
Argitaratua: (2016)

Whole-Genome Sequencing of Human Enteroviruses from Clinical Samples by Nanopore Direct RNA Sequencing
nork: Carole Grädel, et al.
Argitaratua: (2020-07-01)

Whole-genome sequencing identifies nosocomial transmission of extra-pulmonary M. tuberculosis
nork: Walker, T, et al.
Argitaratua: (2016)

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study.
nork: Walker, T, et al.
Argitaratua: (2013)

Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season
nork: Xu, Y, et al.
Argitaratua: (2021)

Whole-genome sequencing identifies nosocomial transmission of extra-pulmonary M. tuberculosis—response
nork: Walker, T, et al.
Argitaratua: (2017)

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study
nork: Pankhurst, L, et al.
Argitaratua: (2015)

Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices
nork: Sanderson, N, et al.
Argitaratua: (2018)

Whole genome sequencing for M/XDR tuberculosis surveillance and for resistance testing
nork: Walker, T, et al.
Argitaratua: (2016)

Selective whole-genome sequencing of Plasmodium parasites directly from blood samples by nanopore adaptive sampling
nork: Katlijn De Meulenaere, et al.
Argitaratua: (2024-01-01)

Evaluation of whole genome sequencing for Mycobacterial species identification and drug susceptibility testing in a clinical setting: a large-scale prospective assessment of performance against line-probe assays and phenotyping
nork: Quan, T, et al.
Argitaratua: (2017)

Optimised use of Oxford nanopore flowcells for hybrid assemblies
nork: Lipworth, S, et al.
Argitaratua: (2020)

Optimizing DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae direct from urine samples
nork: Street, TL, et al.
Argitaratua: (2019)

A quantitative evaluation of MIRU-VNTR typing against whole-genome sequencing for identifying Mycobacterium tuberculosis transmission: a prospective observational cohort study
nork: Wyllie, DH, et al.
Argitaratua: (2018)

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
nork: Walker, T
Argitaratua: (2019)

Microfluidic Capture of Mycobacterium tuberculosis from Clinical Samples for Culture-Free Whole-Genome Sequencing
nork: Nabila Ismail, et al.
Argitaratua: (2023-08-01)

Rapid Nanopore Whole-Genome Sequencing for Anthrax Emergency Preparedness
nork: Heather P. McLaughlin, et al.
Argitaratua: (2020-02-01)

The implementation of whole-genome sequencing for Mycobacterium tuberculosis in Vietnam
nork: D.T. Huong, et al.
Argitaratua: (2024-07-01)