The two-regime method for optimizing stochastic reaction-diffusion simulations.

The two-regime method for optimizing stochastic reaction-diffusion simulations.

Show other versions (1)

Spatial organization and noise play an important role in molecular systems biology. In recent years, a number of software packages have been developed for stochastic spatio-temporal simulation, ranging from detailed molecular-based approaches to less detailed compartment-based simulations. Compartme...

Fuld beskrivelse

Bibliografiske detaljer
Main Authors:	Flegg, M, Chapman, S, Erban, R
Format:	Journal article
Sprog:	English
Udgivet:	2012

Lignende værker

The Two Regime method for optimizing stochastic reaction-diffusion simulations
af: Flegg, M, et al.
Udgivet: (2011)

Reactive boundary conditions for stochastic simulations of reaction-diffusion processes.
af: Erban, R, et al.
Udgivet: (2007)

Reactive boundary conditions for stochastic simulations of reaction-diffusion processes
af: Erban, R, et al.
Udgivet: (2007)

Multiscale stochastic reaction-diffusion modelling: application to actin dynamics in filopodia
af: Erban, R, et al.
Udgivet: (2012)

A practical guide to stochastic simulations of reaction-diffusion processes
af: Erban, R, et al.
Udgivet: (2007)

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.
af: Erban, R, et al.
Udgivet: (2009)

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions
af: Erban, R, et al.
Udgivet: (2009)

Multiscale reaction-diffusion algorithms: PDE-assisted Brownian dynamics
af: Franz, B, et al.
Udgivet: (2012)

Multiscale reaction-diffusion algorithms: pde-assisted Brownian dynamics
af: Franz, B, et al.
Udgivet: (2012)

Multiscale stochastic reaction–diffusion algorithms combining Markov chain models with stochastic partial differential equations
af: Kang, HW, et al.
Udgivet: (2019)

Multiscale reaction-diffusion simulations with Smoldyn
af: Robinson, M, et al.
Udgivet: (2015)

Multiscale reaction-diffusiion algorithms: PDE-assisted Brownian dynamics
af: Franz, B, et al.
Udgivet: (2013)

Higher-order numerical methods for stochastic simulation of chemical reaction systems
af: Székely Jr., T, et al.
Udgivet: (2011)

Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release
af: Flegg, M, et al.
Udgivet: (2013)

An adaptive tau-leaping method for stochastic simulations of reaction-diffusion systems
af: Jill M. A. Padgett, et al.
Udgivet: (2016-03-01)

Efficient methods for simulating stochastic reaction-diffusion models on evolving domains
af: Bartmanski, BJ
Udgivet: (2020)

A higher-order numerical framework for stochastic simulation of chemical reaction systems.
af: Székely, T, et al.
Udgivet: (2012)

A higher-order numerical framework for stochastic simulation of chemical reaction systems
af: Szekely, T, et al.
Udgivet: (2012)

Fat versus Thin Threading Approach on GPUs: Application to Stochastic Simulation of Chemical Reactions.
af: Klingbeil, G, et al.
Udgivet: (2012)

Fat versus thin threading approach on GPUs: application to stochastic simulation of chemical reactions
af: Klingbeil, G, et al.
Udgivet: (2012)

Fat vs. thin threading approach on GPUs: application to stochastic simulation of chemical reactions
af: Klingbeil, G, et al.
Udgivet: (2010)

Identifiability of stochastically modelled reaction networks
af: Enciso, G, et al.
Udgivet: (2021)

Adaptive Finite Element Method Assisted by Stochastic Simulation of Chemical Systems
af: Cotter, S, et al.
Udgivet: (2011)

Adaptive finite element method assisted by stochastic simulation of chemical systems
af: Cotter, S, et al.
Udgivet: (2011)

Adaptive finite element method assisted by stochastic simulation of chemical systems
af: Cotter, S, et al.
Udgivet: (2013)

Simulating Stochastic Reaction-Diffusion Systems on and within Moving Boundaries.
af: Atiyo Ghosh, et al.
Udgivet: (2015-01-01)

Tetrahedral mesh generation and visualization for stochastic reaction-diffusion simulation
af: Hepburn Iain, et al.
Udgivet: (2010-07-01)

Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions
af: Lipkova, J, et al.
Udgivet: (2010)

Analysis of Brownian dynamics simulations of reversible biomolecular reactions
af: Lipkova, J, et al.
Udgivet: (2010)

Reaction time for trimolecular reactions in compartment-based reaction-diffusion models
af: Li, F, et al.
Udgivet: (2018)

Efficient stochastic simulation of reaction-diffusion processes via direct compilation
af: Lis, Mieszko, et al.
Udgivet: (2010)

Hybrid framework for the simulation of stochastic chemical kinetics
af: Duncan, A, et al.
Udgivet: (2016)

On the stochastic modelling of reaction-diffusion processes
af: Twomey, A
Udgivet: (2007)

Multi-grid reaction-diffusion master equation: applications to morphogen gradient modelling
af: Erban, R, et al.
Udgivet: (2024)

Multi-Grid Reaction-Diffusion Master Equation: Applications to Morphogen Gradient Modelling
af: Erban, R, et al.
Udgivet: (2024)

Weak solutions and optimal controls of stochastic fractional reaction-diffusion systems
af: Fu Yongqiang, et al.
Udgivet: (2020-11-01)

Detecting intrinsic slow variables in stochastic dynamical systems by anisotropic diffusion maps.
af: Singer, A, et al.
Udgivet: (2009)

Detecting intrinsic slow variables in stochastic dynamical systems by anisotropic diffusion maps
af: Singer, A, et al.
Udgivet: (2009)

Surface Diffusion by Means of Stochastic Wave Functions. The Ballistic Regime
af: E. E. Torres-Miyares, et al.
Udgivet: (2021-02-01)

A hybrid continuous-discrete method for stochastic reaction–diffusion processes
af: Wing-Cheong Lo, et al.
Udgivet: (2016-01-01)