Computational studies of membrane proteins: from sequence to structure to simulation.

Computational studies of membrane proteins: from sequence to structure to simulation.

In this review, I discuss the recent advances in computational approaches to studying membrane protein structures, covering the latest methods for predicting a protein structure from its amino acid sequence, through to methods for assessing the structural dynamics and lipid interactions within molec...

Descrizione completa

Dettagli Bibliografici
Autore principale:	Stansfeld, P
Natura:	Journal article
Lingua:	English
Pubblicazione:	Elsevier 2017

Documenti analoghi

Molecular simulation approaches to membrane proteins.
di: Stansfeld, P, et al.
Pubblicazione: (2011)

From Coarse Grained to Atomistic: A Serial Multiscale Approach to Membrane Protein Simulations
di: Stansfeld, P, et al.
Pubblicazione: (2011)

Memprotmd: adding the grease to membrane protein structures
di: Stansfeld, P, et al.
Pubblicazione: (2012)

Multiscale simulations of lipid interactions with integral membrane proteins: aquaporins
di: Stansfeld, P, et al.
Pubblicazione: (2011)

The MemProtMD database: A resource for membrane-embedded protein structures and their lipid interactions
di: Newport, T, et al.
Pubblicazione: (2018)

Machine learning in computational modelling of membrane protein sequences and structures: From methodologies to applications
di: Jianfeng Sun, et al.
Pubblicazione: (2023-01-01)

Computational studies of protein sequence and structure
di: Hung, R
Pubblicazione: (1999)

Insights into membrane protein-lipid interactions from free energy calculations
di: Corey, R, et al.
Pubblicazione: (2019)

LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins
di: Ansell, TB, et al.
Pubblicazione: (2023)

Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations.
di: Faraldo-Gómez, J, et al.
Pubblicazione: (2004)

Energetics of protein interactions in the membrane via computer simulations
di: Domanski, J
Pubblicazione: (2017)

LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins
di: T. Bertie Ansell, et al.
Pubblicazione: (2023-11-01)

Structural basis of outer membrane protein insertion by the BAM complex
di: Stansfeld, P, et al.
Pubblicazione: (2016)

Lipidbook: a public repository for force-field parameters used in membrane simulations.
di: Domański, J, et al.
Pubblicazione: (2010)

Lipidbook: A Public Repository for Force-Field Parameters Used in Membrane Simulations
di: Domański, J, et al.
Pubblicazione: (2010)

Biophysical and computational studies of membrane penetration by the GRP1 pleckstrin homology domain.
di: Lumb, C, et al.
Pubblicazione: (2011)

Membrane protein structure quality in molecular dynamics simulation.
di: Law, R, et al.
Pubblicazione: (2005)

The energetics of protein-lipid interactions as viewed by molecular simulations
di: Corey, RA, et al.
Pubblicazione: (2019)

Coarse-grained simulation: a high-throughput computational approach to membrane proteins.
di: Sansom, MS, et al.
Pubblicazione: (2008)

Molecular dynamics simulations and membrane protein structure quality.
di: Ivetac, A, et al.
Pubblicazione: (2008)

Protein 3D structure computed from evolutionary sequence variation.
di: Debora S Marks, et al.
Pubblicazione: (2011-01-01)

Molecular modeling and simulation studies of ion channel structures, dynamics and mechanisms.
di: Tai, K, et al.
Pubblicazione: (2008)

Membrane protein simulations: ion channels and bacterial outer membrane proteins.
di: Domene, C, et al.
Pubblicazione: (2003)

Biomembrane simulations: Computational studies of biological membranes
di: Christian T.K.-H. Stadtländer
Pubblicazione: (2021-01-01)

Computational studies of structural motifs and cotranslational folding mechanisms in membrane and soluble proteins
di: Law, E
Pubblicazione: (2017)

Molecular dynamics simulations of membrane proteins.
di: Biggin, P, et al.
Pubblicazione: (2008)

Simulation studies of the interactions between membrane proteins and detergents.
di: Bond, P, et al.
Pubblicazione: (2005)

A BEST example of channel structure annotation by molecular simulation
di: Rao, S, et al.
Pubblicazione: (2017)

The role of interfacial lipids in stabilising membrane protein oligomers
di: Gupta, K, et al.
Pubblicazione: (2017)

Biophysical studies of membrane protein structure and function
di: Dijkman, P, et al.
Pubblicazione: (2014)

Lipid-protein interactions of integral membrane proteins: a comparative simulation study.
di: Deol, S, et al.
Pubblicazione: (2004)

Membrane models for molecular simulations of peripheral membrane proteins
di: Mahmoud Moqadam, et al.
Pubblicazione: (2021-01-01)

Tau fibril with membrane lipids: Insight from computational modeling and simulations
di: Prechiel A. Barredo, et al.
Pubblicazione: (2021-01-01)

Membrane protein mechanotransduction: computational studies and analytics development
di: Dahl, A, et al.
Pubblicazione: (2014)

The interaction of proteins with membranes: combined computational and neutron studies
di: John, L
Pubblicazione: (2023)

The simulation approach to bacterial outer membrane proteins.
di: Bond, P, et al.
Pubblicazione: (2004)

Insertion and assembly of membrane proteins via simulation.
di: Bond, P, et al.
Pubblicazione: (2006)

Updating view of membrane transport proteins by simulation studies
di: Takashi Sumikama, et al.
Pubblicazione: (2023-11-01)

Computational identification of ubiquitylation sites from protein sequences
di: Ho Shinn-Ying, et al.
Pubblicazione: (2008-07-01)

Simulation and Computational Study of CFD on Tube MBR Membrane Assembly
di: Kun Feng, et al.
Pubblicazione: (2021-01-01)