Alignment-free protein interaction network comparison.

Alignment-free protein interaction network comparison.

MOTIVATION: Biological network comparison software largely relies on the concept of alignment where close matches between the nodes of two or more networks are sought. These node matches are based on sequence similarity and/or interaction patterns. However, because of the incomplete and error-prone...

Πλήρης περιγραφή

Λεπτομέρειες βιβλιογραφικής εγγραφής
Κύριοι συγγραφείς:	Ali, W, Rito, T, Reinert, G, Sun, F, Deane, C
Μορφή:	Journal article
Γλώσσα:	English
Έκδοση:	Oxford University Press 2014

Παρόμοια τεκμήρια

The importance of age and high degree, in protein-protein interaction networks.
ανά: Rito, T, κ.ά.
Έκδοση: (2012)

Protein Interaction Networks and Their Statistical Analysis
ανά: Ali, W, κ.ά.
Έκδοση: (2011)

Functionally guided alignment of protein interaction networks for module detection.
ανά: Ali, W, κ.ά.
Έκδοση: (2009)

How threshold behaviour affects the use of subgraphs for network comparison.
ανά: Rito, T, κ.ά.
Έκδοση: (2010)

How threshold behaviour affects the use of subgraphs for network comparison
ανά: Rito, T, κ.ά.
Έκδοση: (2010)

Multiple alignment-free sequence comparison.
ανά: Ren, J, κ.ά.
Έκδοση: (2013)

Evolutionary analysis reveals low coverage as the major challenge for protein interaction network alignment.
ανά: Ali, W, κ.ά.
Έκδοση: (2010)

Alignment-free sequence comparison (I): statistics and power.
ανά: Reinert, G, κ.ά.
Έκδοση: (2009)

Alignment-free sequence comparison (II): theoretical power of comparison statistics.
ανά: Wan, L, κ.ά.
Έκδοση: (2010)

Predicting and validating protein interactions using network structure
ανά: Chen, P, κ.ά.
Έκδοση: (2008)

Measuring rank robustness in scored protein interaction networks
ανά: Bozhilova, L, κ.ά.
Έκδοση: (2019)

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
ανά: Song, K, κ.ά.
Έκδοση: (2014)

New powerful statistics for alignment-free sequence comparison under a pattern transfer model.
ανά: Liu, X, κ.ά.
Έκδοση: (2011)

Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
ανά: Klimm, F, κ.ά.
Έκδοση: (2020)

Alignment-free sequence analysis and applications
ανά: Ren, J, κ.ά.
Έκδοση: (2018)

Comparison of large networks with sub-sampling strategies
ανά: Ali, W, κ.ά.
Έκδοση: (2016)

Comparison of large networks with sub-sampling strategies
ανά: Reinert, G, κ.ά.
Έκδοση: (2016)

Local network patterns in protein-protein interfaces
ανά: Luo, Q, κ.ά.
Έκδοση: (2013)

Unified Alignment of Protein-Protein Interaction Networks
ανά: Noël Malod-Dognin, κ.ά.
Έκδοση: (2017-04-01)

A statistical approach using network structure in the prediction of protein characteristics.
ανά: Chen, P, κ.ά.
Έκδοση: (2007)

A statistical approach using network structure in the prediction of protein characteristics
ανά: Chen, P, κ.ά.
Έκδοση: (2007)

Assessment of model fit via network comparison methods based on subgraph counts
ανά: Ospina-Forero, L, κ.ά.
Έκδοση: (2018)

Optimizing a global alignment of protein interaction networks
ανά: Ma, C.-Y., κ.ά.
Έκδοση: (2013)

MP-T: improving membrane protein alignment for structure prediction.
ανά: Hill, JR, κ.ά.
Έκδοση: (2013)

Modelling and comparing protein interaction networks using subgraph counts
ανά: Chegancas Rito, TM
Έκδοση: (2012)

Simple Ligand–Receptor Interaction Descriptor (SILIRID) for alignment-free binding site comparison
ανά: Vladimir Chupakhin, κ.ά.
Έκδοση: (2014-06-01)

Environment specific substitution tables improve membrane protein alignment.
ανά: Hill, JR, κ.ά.
Έκδοση: (2011)

Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns
ανά: Wenhong Tian, κ.ά.
Έκδοση: (2013-01-01)

Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks
ανά: Mercè Llabrés, κ.ά.
Έκδοση: (2020-11-01)

The function of communities in protein interaction networks at multiple scales
ανά: Lewis, A, κ.ά.
Έκδοση: (2010)

The function of communities in protein interaction networks at multiple scales
ανά: Lewis, A, κ.ά.
Έκδοση: (2010)

Alignment-free sequence comparison: benefits, applications, and tools
ανά: Andrzej Zielezinski, κ.ά.
Έκδοση: (2017-10-01)

Mutual information and variants for protein domain-domain contact prediction.
ανά: Gomes, M, κ.ά.
Έκδοση: (2012)

Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
ανά: Kujin Tang, κ.ά.
Έκδοση: (2019-12-01)

Protein protein interactions, evolutionary rate, abundance and age
ανά: Saeed, R, κ.ά.
Έκδοση: (2006)

Protein protein interactions, evolutionary rate, abundance and age.
ανά: Saeed, R, κ.ά.
Έκδοση: (2006)

Comparison of protein structures by growing neighborhood alignments
ανά: Bhattacharyya Chiranjib, κ.ά.
Έκδοση: (2007-03-01)

Predicting protein-protein interactions in the context of protein evolution.
ανά: Lewis, A, κ.ά.
Έκδοση: (2010)

Deciphering chemotaxis pathways using cross species comparisons
ανά: Hamer, R, κ.ά.
Έκδοση: (2010)

Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA
ανά: Kujin Tang, κ.ά.
Έκδοση: (2018-12-01)