Alignment-free protein interaction network comparison.

Alignment-free protein interaction network comparison.

MOTIVATION: Biological network comparison software largely relies on the concept of alignment where close matches between the nodes of two or more networks are sought. These node matches are based on sequence similarity and/or interaction patterns. However, because of the incomplete and error-prone...

Bibliografiset tiedot
Päätekijät:	Ali, W, Rito, T, Reinert, G, Sun, F, Deane, C
Aineistotyyppi:	Journal article
Kieli:	English
Julkaistu:	Oxford University Press 2014

Samankaltaisia teoksia

The importance of age and high degree, in protein-protein interaction networks.
Tekijä: Rito, T, et al.
Julkaistu: (2012)

Protein Interaction Networks and Their Statistical Analysis
Tekijä: Ali, W, et al.
Julkaistu: (2011)

Functionally guided alignment of protein interaction networks for module detection.
Tekijä: Ali, W, et al.
Julkaistu: (2009)

How threshold behaviour affects the use of subgraphs for network comparison.
Tekijä: Rito, T, et al.
Julkaistu: (2010)

How threshold behaviour affects the use of subgraphs for network comparison
Tekijä: Rito, T, et al.
Julkaistu: (2010)

Multiple alignment-free sequence comparison.
Tekijä: Ren, J, et al.
Julkaistu: (2013)

Evolutionary analysis reveals low coverage as the major challenge for protein interaction network alignment.
Tekijä: Ali, W, et al.
Julkaistu: (2010)

Alignment-free sequence comparison (I): statistics and power.
Tekijä: Reinert, G, et al.
Julkaistu: (2009)

Alignment-free sequence comparison (II): theoretical power of comparison statistics.
Tekijä: Wan, L, et al.
Julkaistu: (2010)

Predicting and validating protein interactions using network structure
Tekijä: Chen, P, et al.
Julkaistu: (2008)

Measuring rank robustness in scored protein interaction networks
Tekijä: Bozhilova, L, et al.
Julkaistu: (2019)

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
Tekijä: Song, K, et al.
Julkaistu: (2014)

A review of protein–protein interaction network alignment: From pathway comparison to global alignment
Tekijä: Cheng-Yu Ma, et al.
Julkaistu: (2020-01-01)

New powerful statistics for alignment-free sequence comparison under a pattern transfer model.
Tekijä: Liu, X, et al.
Julkaistu: (2011)

Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
Tekijä: Klimm, F, et al.
Julkaistu: (2020)

Alignment-free sequence analysis and applications
Tekijä: Ren, J, et al.
Julkaistu: (2018)

Comparison of large networks with sub-sampling strategies
Tekijä: Ali, W, et al.
Julkaistu: (2016)

Comparison of large networks with sub-sampling strategies
Tekijä: Reinert, G, et al.
Julkaistu: (2016)

Local network patterns in protein-protein interfaces
Tekijä: Luo, Q, et al.
Julkaistu: (2013)

Unified Alignment of Protein-Protein Interaction Networks
Tekijä: Noël Malod-Dognin, et al.
Julkaistu: (2017-04-01)

A statistical approach using network structure in the prediction of protein characteristics.
Tekijä: Chen, P, et al.
Julkaistu: (2007)

A statistical approach using network structure in the prediction of protein characteristics
Tekijä: Chen, P, et al.
Julkaistu: (2007)

Measuring rank robustness in scored protein interaction networks
Tekijä: Lyuba V. Bozhilova, et al.
Julkaistu: (2019-08-01)

Assessment of model fit via network comparison methods based on subgraph counts
Tekijä: Ospina-Forero, L, et al.
Julkaistu: (2018)

Optimizing a global alignment of protein interaction networks
Tekijä: Ma, C.-Y., et al.
Julkaistu: (2013)

MP-T: improving membrane protein alignment for structure prediction.
Tekijä: Hill, JR, et al.
Julkaistu: (2013)

Local network patterns in protein-protein interfaces.
Tekijä: Qiang Luo, et al.
Julkaistu: (2013-01-01)

Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
Tekijä: Florian Klimm, et al.
Julkaistu: (2020-11-01)

Modelling and comparing protein interaction networks using subgraph counts
Tekijä: Chegancas Rito, TM
Julkaistu: (2012)

Benchmarking of alignment-free sequence comparison methods
Tekijä: Andrzej Zielezinski, et al.
Julkaistu: (2019-07-01)

Simple Ligand–Receptor Interaction Descriptor (SILIRID) for alignment-free binding site comparison
Tekijä: Vladimir Chupakhin, et al.
Julkaistu: (2014-06-01)

Environment specific substitution tables improve membrane protein alignment.
Tekijä: Hill, JR, et al.
Julkaistu: (2011)

Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns
Tekijä: Wenhong Tian, et al.
Julkaistu: (2013-01-01)

Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks
Tekijä: Mercè Llabrés, et al.
Julkaistu: (2020-11-01)

The function of communities in protein interaction networks at multiple scales
Tekijä: Lewis, A, et al.
Julkaistu: (2010)

The function of communities in protein interaction networks at multiple scales
Tekijä: Lewis, A, et al.
Julkaistu: (2010)

Alignment-free sequence comparison: benefits, applications, and tools
Tekijä: Andrzej Zielezinski, et al.
Julkaistu: (2017-10-01)

Alignment of non-covalent interactions at protein-protein interfaces.
Tekijä: Hongbo Zhu, et al.
Julkaistu: (2008-01-01)

Mutual information and variants for protein domain-domain contact prediction.
Tekijä: Gomes, M, et al.
Julkaistu: (2012)

Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
Tekijä: Kujin Tang, et al.
Julkaistu: (2019-12-01)