Alignment-free protein interaction network comparison.

Alignment-free protein interaction network comparison.

MOTIVATION: Biological network comparison software largely relies on the concept of alignment where close matches between the nodes of two or more networks are sought. These node matches are based on sequence similarity and/or interaction patterns. However, because of the incomplete and error-prone...

Бүрэн тодорхойлолт

Номзүйн дэлгэрэнгүй
Үндсэн зохиолчид:	Ali, W, Rito, T, Reinert, G, Sun, F, Deane, C
Формат:	Journal article
Хэл сонгох:	English
Хэвлэсэн:	Oxford University Press 2014

Ижил төстэй зүйлс

The importance of age and high degree, in protein-protein interaction networks.
-н: Rito, T, зэрэг
Хэвлэсэн: (2012)

Protein Interaction Networks and Their Statistical Analysis
-н: Ali, W, зэрэг
Хэвлэсэн: (2011)

Functionally guided alignment of protein interaction networks for module detection.
-н: Ali, W, зэрэг
Хэвлэсэн: (2009)

How threshold behaviour affects the use of subgraphs for network comparison.
-н: Rito, T, зэрэг
Хэвлэсэн: (2010)

How threshold behaviour affects the use of subgraphs for network comparison
-н: Rito, T, зэрэг
Хэвлэсэн: (2010)

Multiple alignment-free sequence comparison.
-н: Ren, J, зэрэг
Хэвлэсэн: (2013)

Evolutionary analysis reveals low coverage as the major challenge for protein interaction network alignment.
-н: Ali, W, зэрэг
Хэвлэсэн: (2010)

Alignment-free sequence comparison (I): statistics and power.
-н: Reinert, G, зэрэг
Хэвлэсэн: (2009)

Alignment-free sequence comparison (II): theoretical power of comparison statistics.
-н: Wan, L, зэрэг
Хэвлэсэн: (2010)

Predicting and validating protein interactions using network structure
-н: Chen, P, зэрэг
Хэвлэсэн: (2008)

Measuring rank robustness in scored protein interaction networks
-н: Bozhilova, L, зэрэг
Хэвлэсэн: (2019)

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
-н: Song, K, зэрэг
Хэвлэсэн: (2014)

A review of protein–protein interaction network alignment: From pathway comparison to global alignment
-н: Cheng-Yu Ma, зэрэг
Хэвлэсэн: (2020-01-01)

New powerful statistics for alignment-free sequence comparison under a pattern transfer model.
-н: Liu, X, зэрэг
Хэвлэсэн: (2011)

Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
-н: Klimm, F, зэрэг
Хэвлэсэн: (2020)

Alignment-free sequence analysis and applications
-н: Ren, J, зэрэг
Хэвлэсэн: (2018)

Comparison of large networks with sub-sampling strategies
-н: Ali, W, зэрэг
Хэвлэсэн: (2016)

Comparison of large networks with sub-sampling strategies
-н: Reinert, G, зэрэг
Хэвлэсэн: (2016)

Local network patterns in protein-protein interfaces
-н: Luo, Q, зэрэг
Хэвлэсэн: (2013)

Unified Alignment of Protein-Protein Interaction Networks
-н: Noël Malod-Dognin, зэрэг
Хэвлэсэн: (2017-04-01)

A statistical approach using network structure in the prediction of protein characteristics.
-н: Chen, P, зэрэг
Хэвлэсэн: (2007)

A statistical approach using network structure in the prediction of protein characteristics
-н: Chen, P, зэрэг
Хэвлэсэн: (2007)

Measuring rank robustness in scored protein interaction networks
-н: Lyuba V. Bozhilova, зэрэг
Хэвлэсэн: (2019-08-01)

Assessment of model fit via network comparison methods based on subgraph counts
-н: Ospina-Forero, L, зэрэг
Хэвлэсэн: (2018)

Optimizing a global alignment of protein interaction networks
-н: Ma, C.-Y., зэрэг
Хэвлэсэн: (2013)

MP-T: improving membrane protein alignment for structure prediction.
-н: Hill, JR, зэрэг
Хэвлэсэн: (2013)

Local network patterns in protein-protein interfaces.
-н: Qiang Luo, зэрэг
Хэвлэсэн: (2013-01-01)

Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
-н: Florian Klimm, зэрэг
Хэвлэсэн: (2020-11-01)

Modelling and comparing protein interaction networks using subgraph counts
-н: Chegancas Rito, TM
Хэвлэсэн: (2012)

Benchmarking of alignment-free sequence comparison methods
-н: Andrzej Zielezinski, зэрэг
Хэвлэсэн: (2019-07-01)

Simple Ligand–Receptor Interaction Descriptor (SILIRID) for alignment-free binding site comparison
-н: Vladimir Chupakhin, зэрэг
Хэвлэсэн: (2014-06-01)

Environment specific substitution tables improve membrane protein alignment.
-н: Hill, JR, зэрэг
Хэвлэсэн: (2011)

Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns
-н: Wenhong Tian, зэрэг
Хэвлэсэн: (2013-01-01)

Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks
-н: Mercè Llabrés, зэрэг
Хэвлэсэн: (2020-11-01)

The function of communities in protein interaction networks at multiple scales
-н: Lewis, A, зэрэг
Хэвлэсэн: (2010)

The function of communities in protein interaction networks at multiple scales
-н: Lewis, A, зэрэг
Хэвлэсэн: (2010)

Alignment-free sequence comparison: benefits, applications, and tools
-н: Andrzej Zielezinski, зэрэг
Хэвлэсэн: (2017-10-01)

Alignment of non-covalent interactions at protein-protein interfaces.
-н: Hongbo Zhu, зэрэг
Хэвлэсэн: (2008-01-01)

Mutual information and variants for protein domain-domain contact prediction.
-н: Gomes, M, зэрэг
Хэвлэсэн: (2012)

Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
-н: Kujin Tang, зэрэг
Хэвлэсэн: (2019-12-01)