Force-induced rupture of a DNA duplex: from fundamentals to force sensors

Force-induced rupture of a DNA duplex: from fundamentals to force sensors

The rupture of double-stranded DNA under stress is a key process in biophysics and nanotechnology. In this article, we consider the shear-induced rupture of short DNA duplexes, a system that has been given new importance by recently designed force sensors and nanotechnological devices. We argue that...

Descripció completa

Dades bibliogràfiques
Autors principals:	Mosayebi, M, Louis, AA, Doye, JPK, Ouldridge, TE
Format:	Journal article
Idioma:	English
Publicat:	American Chemical Society 2015

Ítems similars

Measuring internal forces in single-stranded DNA: application to a DNA force clamp
per: Engel, MC, et al.
Publicat: (2020)

Free energy landscapes of DNA and its assemblies: perspectives from coarse-grained modelling
per: Doye, JPK, et al.
Publicat: (2022)

Characterizing the bending and flexibility induced by bulges in DNA duplexes.
per: Schreck, J, et al.
Publicat: (2015)

Direct simulation of the self-assembly of a small DNA origami
per: Snodin, BEK, et al.
Publicat: (2016)

Modelling toehold-mediated RNA strand displacement
per: Šulc, P, et al.
Publicat: (2015)

Simulation of reversible molecular mechanical logic gates and circuits
per: Seet, I, et al.
Publicat: (2023)

The role of loop stacking in the dynamics of DNA hairpin formation.
per: Mosayebi, M, et al.
Publicat: (2014)

Self-limiting polymerization of DNA origami subunits with strain accumulation
per: Berengut, JF, et al.
Publicat: (2020)

DNA hairpins primarily promote duplex melting rather than inhibiting hybridization
per: Schreck, J, et al.
Publicat: (2014)

Force-induced unravelling of DNA origami
per: Engel, M, et al.
Publicat: (2018)

The interplay of supercoiling and thymine dimers in DNA
per: Lim, W, et al.
Publicat: (2022)

DNA nanotweezers studied with a coarse-grained model of DNA.
per: Ouldridge, T, et al.
Publicat: (2010)

DNA nanotweezers studied with a coarse-grained model of DNA
per: Ouldridge, T, et al.
Publicat: (2010)

Plectoneme tip bubbles : coupled denaturation and writhing in supercoiled DNA
per: Matek, C, et al.
Publicat: (2015)

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model.
per: Ouldridge, T, et al.
Publicat: (2011)

Coarse-grained modelling of DNA-RNA hybrids
per: Ratajczyk, EJ, et al.
Publicat: (2023)

Modeling multiple duplex DNA attachments in a force-extension experiment
per: Allan Raudsepp, et al.
Publicat: (2022-03-01)

The free-energy landscape of a mechanically bistable DNA origami
per: Wong, CK, et al.
Publicat: (2022)

Coarse-grained modeling of DNA and DNA nanotechnology
per: Ouldridge, T, et al.
Publicat: (2012)

The self-assembly of DNA Holliday junctions studied with a minimal model
per: Ouldridge, T, et al.
Publicat: (2009)

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
per: Šulc, P, et al.
Publicat: (2014)

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model
per: Sulc, P, et al.
Publicat: (2012)

Coarse-grained simulations of DNA overstretching.
per: Romano, F, et al.
Publicat: (2013)

Extracting bulk properties of self-assembling systems from small simulations.
per: Ouldridge, T, et al.
Publicat: (2010)

DNA hybridization kinetics: zippering, internal displacement and sequence dependence.
per: Ouldridge, T, et al.
Publicat: (2013)

How Well Can DNA Rupture DNA? Shearing and Unzipping Forces inside DNA Nanostructures
per: Shern Ren Tee, et al.
Publicat: (2018-01-01)

The effect of topology on the structure and free energy landscape of DNA kissing complexes.
per: Romano, F, et al.
Publicat: (2012)

TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami
per: Suma, A, et al.
Publicat: (2019)

DNA cruciform arms nucleate through a correlated but asynchronous cooperative mechanism.
per: Matek, C, et al.
Publicat: (2012)

Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker.
per: Ouldridge, T, et al.
Publicat: (2013)

Identifying physical causes of apparent enhanced cyclization of short DNA molecules with a coarse-grained model
per: Harrison, R, et al.
Publicat: (2019)

Characterizing the free-energy landscapes of DNA origamis
per: Wong, CK, et al.
Publicat: (2022)

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.
per: Snodin, B, et al.
Publicat: (2015)

DNA-based optical sensors for forces in cytoskeletal networks
per: Jayachandran, C, et al.
Publicat: (2023)

Sequence-dependent thermodynamics of a coarse-grained DNA model.
per: Šulc, P, et al.
Publicat: (2012)

Chiral shape fluctuations and the origin of chirality in cholesteric phases of DNA origamis
per: Tortora, MMC, et al.
Publicat: (2020)

Fundamentals of forced and mixed convection/
per: National Heat Transfer Conference (23rd : 1985 : Denver), et al.
Publicat: (1985)

Cooperative control of a DNA origami force sensor
per: Ariel Robbins, et al.
Publicat: (2024-02-01)

Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly
per: Fonseca, P, et al.
Publicat: (2018)

Massively parallelized molecular force manipulation with on-demand thermal and optical control
per: Su, H, et al.
Publicat: (2021)