treespace: Statistical exploration of landscapes of phylogenetic trees.

treespace: Statistical exploration of landscapes of phylogenetic trees.

The increasing availability of large genomic data sets as well as the advent of Bayesian phylogenetics facilitates the investigation of phylogenetic incongruence, which can result in the impossibility of representing phylogenetic relationships using a single tree. While sometimes considered as a nui...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Jombart, T, Kendall, M, Almagro-Garcia, J, Colijn, C
Fformat:	Journal article
Iaith:	English
Cyhoeddwyd:	Wiley 2017

Eitemau Tebyg

Mapping phylogenetic trees to reveal distinct patterns of evolution
gan: Kendall, M, et al.
Cyhoeddwyd: (2016)

Statistical phylogenetic tree analysis using differences of means
gan: Elissaveta Arnaoudova, et al.
Cyhoeddwyd: (2010-08-01)

An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
gan: Lunter, G, et al.
Cyhoeddwyd: (2003)

Integrative Phylogenetics: Tools for Palaeontologists to Explore the Tree of Life
gan: Raquel López-Antoñanzas, et al.
Cyhoeddwyd: (2022-08-01)

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.
gan: Don Klinkenberg, et al.
Cyhoeddwyd: (2017-05-01)

Estimating transmission from genetic and epidemiological data: a metric to compare transmission trees
gan: Kendall, M, et al.
Cyhoeddwyd: (2018)

Employing phylogenetic tree shape statistics to resolve the underlying host population structure
gan: Hassan W. Kayondo, et al.
Cyhoeddwyd: (2021-11-01)

PhyloExplorer: a web server to validate, explore and query phylogenetic trees
gan: Auberval Nicolas, et al.
Cyhoeddwyd: (2009-05-01)

Network science inspires novel tree shape statistics.
gan: Leonid Chindelevitch, et al.
Cyhoeddwyd: (2021-01-01)

Spectral cluster supertree: fast and statistically robust merging of rooted phylogenetic trees
gan: Robert N. McArthur, et al.
Cyhoeddwyd: (2024-10-01)

Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins
gan: Kelly William P, et al.
Cyhoeddwyd: (2010-09-01)

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study
gan: Lees, JA, et al.
Cyhoeddwyd: (2018)

Taxonium, a web-based tool for exploring large phylogenetic trees
gan: Theo Sanderson
Cyhoeddwyd: (2022-11-01)

Operads and phylogenetic trees
gan: Baez, JC, et al.
Cyhoeddwyd: (2017)

Imputing Phylogenetic Trees Using Tropical Polytopes over the Space of Phylogenetic Trees
gan: Ruriko Yoshida
Cyhoeddwyd: (2023-08-01)

An exploration of the impact of phylogenetic tree structure on NTI and βNTI estimates of community assembly
gan: Madeleine J.S. Gundersen, et al.
Cyhoeddwyd: (2024-10-01)

Phylogenetics—A Web of Trees
gan: Tim Littlejohn
Cyhoeddwyd: (2000-09-01)

Geodesics to characterize the phylogenetic landscape.
gan: Marzieh Khodaei, et al.
Cyhoeddwyd: (2023-01-01)

TreeSnatcher plus: capturing phylogenetic trees from images
gan: Laubach Thomas, et al.
Cyhoeddwyd: (2012-05-01)

TreeVector: scalable, interactive, phylogenetic trees for the web.
gan: Ralph Pethica, et al.
Cyhoeddwyd: (2010-01-01)

The use of statistical phylogenetics in virology
gan: Yu. A. Vakulenko, et al.
Cyhoeddwyd: (2021-02-01)

Visual Browse and Exploration in Motion Capture Data with Phylogenetic Tree of Context-Aware Poses
gan: Songle Chen, et al.
Cyhoeddwyd: (2020-09-01)

Incongruencies in Vaccinia Virus Phylogenetic Trees
gan: Chad Smithson, et al.
Cyhoeddwyd: (2014-10-01)

Trees for landscaping /
gan: 340947 Mathur, L. M., et al.
Cyhoeddwyd: (1968)

Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees
gan: Penn, MJ, et al.
Cyhoeddwyd: (2023)

An exploration of how to define and measure the evolution of behavior, learning, memory and mind across the full phylogenetic tree of life
gan: E. M. Eisenstein, et al.
Cyhoeddwyd: (2016-05-01)

Phylogenetic trees: Grammar versus vocabulary
gan: Vladimir N. Polyakov, et al.
Cyhoeddwyd: (2022-03-01)

Erratum to “On the matrix condition of phylogenetic tree”
Cyhoeddwyd: (2021-09-01)

Pareto-optimal phylogenetic tree reconciliation
gan: Libeskind-Hadas, Ran, et al.
Cyhoeddwyd: (2015)

Phylogenetic trees and the future of mammalian biodiversity
gan: Grenyer, R
Cyhoeddwyd: (2008)

TreeCluster: Clustering biological sequences using phylogenetic trees.
gan: Metin Balaban, et al.
Cyhoeddwyd: (2019-01-01)

Random Tree Optimization for the Construction of the Most Parsimonious Phylogenetic Trees
gan: Li, Fulu, et al.
Cyhoeddwyd: (2010)

An efficient and extensible approach for compressing phylogenetic trees
gan: Williams Tiffani L, et al.
Cyhoeddwyd: (2011-10-01)

Dendroscope: An interactive viewer for large phylogenetic trees
gan: Franz Markus, et al.
Cyhoeddwyd: (2007-11-01)

A preliminary exploration of the cooling effect of tree shade in urban landscapes
gan: Qiuyan Yu, et al.
Cyhoeddwyd: (2020-10-01)

Iroki: automatic customization and visualization of phylogenetic trees
gan: Ryan M. Moore, et al.
Cyhoeddwyd: (2020-02-01)

Statistical Methods in Phylogenetic and Evolutionary Inferences
gan: Luigi Bertolotti, et al.
Cyhoeddwyd: (2013-05-01)

Exploring the multifunctional landscapes model in areas dominated by non-native tree plantations
gan: Andrea Monica D. Ortiz, et al.
Cyhoeddwyd: (2024-09-01)

TreeViewer: Flexible, modular software to visualise and manipulate phylogenetic trees
gan: Giorgio Bianchini, et al.
Cyhoeddwyd: (2024-02-01)

Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction.
gan: Uyen Mai, et al.
Cyhoeddwyd: (2017-01-01)