Population genomics and transcriptomics of Plasmodium falciparum in Cambodia and Vietnam uncover key components of the artemisinin resistance genetic background
The emergence of Plasmodium falciparum parasites resistant to artemisinins compromises the efficacy of Artemisinin Combination Therapies (ACTs), the global first-line malaria treatment. Artemisinin resistance is a complex genetic trait in which nonsynonymous SNPs in PfK13 cooperate with other geneti...
| Главные авторы: | , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Формат: | Journal article |
| Язык: | English |
| Опубликовано: |
Nature Research
2024
|
| _version_ | 1826316801142685696 |
|---|---|
| author | Nayak, S Peto, TJ Kucharski, M Tripura, R Callery, JJ Quang Huy, DT Gendrot, M Lek, D Nghia, HDT van der Pluijm, RW Dong, N Long, LT Vongpromek, R Rekol, H Hoang Chau, N Miotto, O Mukaka, M Dhorda, M von Seidlein, L Imwong, M Roca, X Day, NPJ White, NJ Dondorp, AM |
| author_facet | Nayak, S Peto, TJ Kucharski, M Tripura, R Callery, JJ Quang Huy, DT Gendrot, M Lek, D Nghia, HDT van der Pluijm, RW Dong, N Long, LT Vongpromek, R Rekol, H Hoang Chau, N Miotto, O Mukaka, M Dhorda, M von Seidlein, L Imwong, M Roca, X Day, NPJ White, NJ Dondorp, AM |
| author_sort | Nayak, S |
| collection | OXFORD |
| description | The emergence of Plasmodium falciparum parasites resistant to artemisinins compromises the efficacy of Artemisinin Combination Therapies (ACTs), the global first-line malaria treatment. Artemisinin resistance is a complex genetic trait in which nonsynonymous SNPs in PfK13 cooperate with other genetic variations. Here, we present population genomic/transcriptomic analyses of P. falciparum collected from patients with uncomplicated malaria in Cambodia and Vietnam between 2018 and 2020. Besides the PfK13 SNPs, several polymorphisms, including nonsynonymous SNPs (N1131I and N821K) in PfRad5 and an intronic SNP in PfWD11 (WD40 repeat-containing protein on chromosome 11), appear to be associated with artemisinin resistance, possibly as new markers. There is also a defined set of genes whose steady-state levels of mRNA and/or splice variants or antisense transcripts correlate with artemisinin resistance at the base level. In vivo transcriptional responses to artemisinins indicate the resistant parasite’s capacity to decelerate its intraerythrocytic developmental cycle (IDC), which can contribute to the resistant phenotype. During this response, PfRAD5 and PfWD11 upregulate their respective alternatively/aberrantly spliced isoforms, suggesting their contribution to the protective response to artemisinins. PfRAD5 and PfWD11 appear under selective pressure in the Greater Mekong Sub-region over the last decade, suggesting their role in the genetic background of the artemisinin resistance. |
| first_indexed | 2024-12-09T03:39:31Z |
| format | Journal article |
| id | oxford-uuid:8c589029-31c9-4d95-a0fb-be4ca16e22a6 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2025-02-19T04:28:34Z |
| publishDate | 2024 |
| publisher | Nature Research |
| record_format | dspace |
| spelling | oxford-uuid:8c589029-31c9-4d95-a0fb-be4ca16e22a62024-12-14T20:04:33ZPopulation genomics and transcriptomics of Plasmodium falciparum in Cambodia and Vietnam uncover key components of the artemisinin resistance genetic backgroundJournal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:8c589029-31c9-4d95-a0fb-be4ca16e22a6EnglishJisc Publications RouterNature Research2024Nayak, SPeto, TJKucharski, MTripura, RCallery, JJQuang Huy, DTGendrot, MLek, DNghia, HDTvan der Pluijm, RWDong, NLong, LTVongpromek, RRekol, HHoang Chau, NMiotto, OMukaka, MDhorda, Mvon Seidlein, LImwong, MRoca, XDay, NPJWhite, NJDondorp, AMThe emergence of Plasmodium falciparum parasites resistant to artemisinins compromises the efficacy of Artemisinin Combination Therapies (ACTs), the global first-line malaria treatment. Artemisinin resistance is a complex genetic trait in which nonsynonymous SNPs in PfK13 cooperate with other genetic variations. Here, we present population genomic/transcriptomic analyses of P. falciparum collected from patients with uncomplicated malaria in Cambodia and Vietnam between 2018 and 2020. Besides the PfK13 SNPs, several polymorphisms, including nonsynonymous SNPs (N1131I and N821K) in PfRad5 and an intronic SNP in PfWD11 (WD40 repeat-containing protein on chromosome 11), appear to be associated with artemisinin resistance, possibly as new markers. There is also a defined set of genes whose steady-state levels of mRNA and/or splice variants or antisense transcripts correlate with artemisinin resistance at the base level. In vivo transcriptional responses to artemisinins indicate the resistant parasite’s capacity to decelerate its intraerythrocytic developmental cycle (IDC), which can contribute to the resistant phenotype. During this response, PfRAD5 and PfWD11 upregulate their respective alternatively/aberrantly spliced isoforms, suggesting their contribution to the protective response to artemisinins. PfRAD5 and PfWD11 appear under selective pressure in the Greater Mekong Sub-region over the last decade, suggesting their role in the genetic background of the artemisinin resistance. |
| spellingShingle | Nayak, S Peto, TJ Kucharski, M Tripura, R Callery, JJ Quang Huy, DT Gendrot, M Lek, D Nghia, HDT van der Pluijm, RW Dong, N Long, LT Vongpromek, R Rekol, H Hoang Chau, N Miotto, O Mukaka, M Dhorda, M von Seidlein, L Imwong, M Roca, X Day, NPJ White, NJ Dondorp, AM Population genomics and transcriptomics of Plasmodium falciparum in Cambodia and Vietnam uncover key components of the artemisinin resistance genetic background |
| title | Population genomics and transcriptomics of Plasmodium falciparum in Cambodia and Vietnam uncover key components of the artemisinin resistance genetic background |
| title_full | Population genomics and transcriptomics of Plasmodium falciparum in Cambodia and Vietnam uncover key components of the artemisinin resistance genetic background |
| title_fullStr | Population genomics and transcriptomics of Plasmodium falciparum in Cambodia and Vietnam uncover key components of the artemisinin resistance genetic background |
| title_full_unstemmed | Population genomics and transcriptomics of Plasmodium falciparum in Cambodia and Vietnam uncover key components of the artemisinin resistance genetic background |
| title_short | Population genomics and transcriptomics of Plasmodium falciparum in Cambodia and Vietnam uncover key components of the artemisinin resistance genetic background |
| title_sort | population genomics and transcriptomics of plasmodium falciparum in cambodia and vietnam uncover key components of the artemisinin resistance genetic background |
| work_keys_str_mv | AT nayaks populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT petotj populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT kucharskim populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT tripurar populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT calleryjj populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT quanghuydt populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT gendrotm populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT lekd populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT nghiahdt populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT vanderpluijmrw populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT dongn populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT longlt populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT vongpromekr populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT rekolh populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT hoangchaun populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT miottoo populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT mukakam populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT dhordam populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT vonseidleinl populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT imwongm populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT rocax populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT daynpj populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT whitenj populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground AT dondorpam populationgenomicsandtranscriptomicsofplasmodiumfalciparumincambodiaandvietnamuncoverkeycomponentsoftheartemisininresistancegeneticbackground |