Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters
Background: Transposable elements (TEs) are a diverse group of self-mobilizing DNA elements. Transposition has been exploited as a powerful tool for molecular biology and genomics. However, transposition is sometimes limited because of auto-regulatory mechanisms that presumably allow them to cohabit...
| Main Authors: | , |
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| Format: | Journal article |
| Language: | English |
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BioMed Central
2020
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| _version_ | 1797081507494363136 |
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| author | Tellier, M Chalmers, R |
| author_facet | Tellier, M Chalmers, R |
| author_sort | Tellier, M |
| collection | OXFORD |
| description | Background: Transposable elements (TEs) are a diverse group of self-mobilizing DNA elements. Transposition has been exploited as a powerful tool for molecular biology and genomics. However, transposition is sometimes limited because of auto-regulatory mechanisms that presumably allow them to cohabit within their hosts without causing excessive genomic damage. The papillation assay provides a powerful visual screen for hyperactive transposases. Transposition is revealed by the activation of a promoter-less lacZ gene when the transposon integrates into a non-essential gene on the host chromosome. Transposition events are detected as small blue speckles, or papillae, on the white background of the main Escherichia coli colony. Results: We analysed the parameters of the papillation assay including the strength of the transposase transcriptional and translational signals. To overcome certain limitations of inducible promoters, we constructed a set of vectors based on constitutive promoters of different strengths to widen the range of transposase expression. We characterized and validated our expression vectors with Hsmar1, a member of the mariner transposon family. The highest rate of transposition was observed with the weakest promoters. We then took advantage of our approach to investigate how the level of transposition responds to selected point mutations and the effect of joining the transposase monomers into a single-chain dimer. Conclusions: We generated a set of vectors to provide a wide range of transposase expression which will be useful for screening libraries of transposase mutants. The use of weak promoters should allow screening for truly hyperactive transposases rather than those that are simply resistant to auto-regulatory mechanisms, such as overproduction inhibition (OPI). We also found that mutations in the Hsmar1 dimer interface provide resistance to OPI in bacteria, which could be valuable for improving bacterial transposon mutagenesis techniques. |
| first_indexed | 2024-03-07T01:15:18Z |
| format | Journal article |
| id | oxford-uuid:8e71ddba-3c38-4937-b90a-d8e502e716c2 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-07T01:15:18Z |
| publishDate | 2020 |
| publisher | BioMed Central |
| record_format | dspace |
| spelling | oxford-uuid:8e71ddba-3c38-4937-b90a-d8e502e716c22022-03-26T22:57:48ZCompensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promotersJournal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:8e71ddba-3c38-4937-b90a-d8e502e716c2EnglishSymplectic ElementsBioMed Central2020Tellier, MChalmers, RBackground: Transposable elements (TEs) are a diverse group of self-mobilizing DNA elements. Transposition has been exploited as a powerful tool for molecular biology and genomics. However, transposition is sometimes limited because of auto-regulatory mechanisms that presumably allow them to cohabit within their hosts without causing excessive genomic damage. The papillation assay provides a powerful visual screen for hyperactive transposases. Transposition is revealed by the activation of a promoter-less lacZ gene when the transposon integrates into a non-essential gene on the host chromosome. Transposition events are detected as small blue speckles, or papillae, on the white background of the main Escherichia coli colony. Results: We analysed the parameters of the papillation assay including the strength of the transposase transcriptional and translational signals. To overcome certain limitations of inducible promoters, we constructed a set of vectors based on constitutive promoters of different strengths to widen the range of transposase expression. We characterized and validated our expression vectors with Hsmar1, a member of the mariner transposon family. The highest rate of transposition was observed with the weakest promoters. We then took advantage of our approach to investigate how the level of transposition responds to selected point mutations and the effect of joining the transposase monomers into a single-chain dimer. Conclusions: We generated a set of vectors to provide a wide range of transposase expression which will be useful for screening libraries of transposase mutants. The use of weak promoters should allow screening for truly hyperactive transposases rather than those that are simply resistant to auto-regulatory mechanisms, such as overproduction inhibition (OPI). We also found that mutations in the Hsmar1 dimer interface provide resistance to OPI in bacteria, which could be valuable for improving bacterial transposon mutagenesis techniques. |
| spellingShingle | Tellier, M Chalmers, R Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters |
| title | Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters |
| title_full | Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters |
| title_fullStr | Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters |
| title_full_unstemmed | Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters |
| title_short | Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters |
| title_sort | compensating for over production inhibition of the hsmar1 transposon in escherichia coli using a series of constitutive promoters |
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