The Quest for Orthologs orthology benchmark service in 2022
The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for ma...
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Format: | Journal article |
| Language: | English |
| Published: |
Oxford University Press
2022
|
| _version_ | 1824458811165900800 |
|---|---|
| author | Nevers, Y Jones, TEM Jyothi, D Yates, B Ferret, M Portell-Silva, L Codo, L Cosentino, S Marcet-Houben, M Vlasova, A Poidevin, L Kress, A Hickman, M Persson, E Piližota, I Guijarro-Clarke, C the OpenEBench team the Quest for Orthologs Consortium Iwasaki, W Lecompte, O Sonnhammer, E Roos, DS Gabaldón, T Thybert, D Thomas, PD Emms, DM |
| author_facet | Nevers, Y Jones, TEM Jyothi, D Yates, B Ferret, M Portell-Silva, L Codo, L Cosentino, S Marcet-Houben, M Vlasova, A Poidevin, L Kress, A Hickman, M Persson, E Piližota, I Guijarro-Clarke, C the OpenEBench team the Quest for Orthologs Consortium Iwasaki, W Lecompte, O Sonnhammer, E Roos, DS Gabaldón, T Thybert, D Thomas, PD Emms, DM |
| author_sort | Nevers, Y |
| collection | OXFORD |
| description | The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform. |
| first_indexed | 2025-02-19T04:31:49Z |
| format | Journal article |
| id | oxford-uuid:944298e6-f361-4fc2-bf76-b94360577711 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2025-02-19T04:31:49Z |
| publishDate | 2022 |
| publisher | Oxford University Press |
| record_format | dspace |
| spelling | oxford-uuid:944298e6-f361-4fc2-bf76-b943605777112025-01-09T20:12:22ZThe Quest for Orthologs orthology benchmark service in 2022Journal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:944298e6-f361-4fc2-bf76-b94360577711EnglishJisc Publications RouterOxford University Press2022Nevers, YJones, TEMJyothi, DYates, BFerret, MPortell-Silva, LCodo, LCosentino, SMarcet-Houben, MVlasova, APoidevin, LKress, AHickman, MPersson, EPiližota, IGuijarro-Clarke, Cthe OpenEBench team the Quest for Orthologs Consortium Iwasaki, WLecompte, OSonnhammer, ERoos, DSGabaldón, TThybert, DThomas, PDEmms, DMThe Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existing and new methods of orthology inference (the bedrock for many comparative genomics and phylogenetic analysis) over a standard dataset and through common procedures. The Quest for Orthologs Consortium is dedicated to maintaining the resource up to date, through regular updates of the Reference Proteomes and increasingly accessible data through the OpenEBench platform. For this update, we have added a new benchmark based on curated orthology assertion from the Vertebrate Gene Nomenclature Committee, and provided an example meta-analysis of the public predictions present on the platform. |
| spellingShingle | Nevers, Y Jones, TEM Jyothi, D Yates, B Ferret, M Portell-Silva, L Codo, L Cosentino, S Marcet-Houben, M Vlasova, A Poidevin, L Kress, A Hickman, M Persson, E Piližota, I Guijarro-Clarke, C the OpenEBench team the Quest for Orthologs Consortium Iwasaki, W Lecompte, O Sonnhammer, E Roos, DS Gabaldón, T Thybert, D Thomas, PD Emms, DM The Quest for Orthologs orthology benchmark service in 2022 |
| title | The Quest for Orthologs orthology benchmark service in 2022 |
| title_full | The Quest for Orthologs orthology benchmark service in 2022 |
| title_fullStr | The Quest for Orthologs orthology benchmark service in 2022 |
| title_full_unstemmed | The Quest for Orthologs orthology benchmark service in 2022 |
| title_short | The Quest for Orthologs orthology benchmark service in 2022 |
| title_sort | quest for orthologs orthology benchmark service in 2022 |
| work_keys_str_mv | AT neversy thequestfororthologsorthologybenchmarkservicein2022 AT jonestem thequestfororthologsorthologybenchmarkservicein2022 AT jyothid thequestfororthologsorthologybenchmarkservicein2022 AT yatesb thequestfororthologsorthologybenchmarkservicein2022 AT ferretm thequestfororthologsorthologybenchmarkservicein2022 AT portellsilval thequestfororthologsorthologybenchmarkservicein2022 AT codol thequestfororthologsorthologybenchmarkservicein2022 AT cosentinos thequestfororthologsorthologybenchmarkservicein2022 AT marcethoubenm thequestfororthologsorthologybenchmarkservicein2022 AT vlasovaa thequestfororthologsorthologybenchmarkservicein2022 AT poidevinl thequestfororthologsorthologybenchmarkservicein2022 AT kressa thequestfororthologsorthologybenchmarkservicein2022 AT hickmanm thequestfororthologsorthologybenchmarkservicein2022 AT perssone thequestfororthologsorthologybenchmarkservicein2022 AT pilizotai thequestfororthologsorthologybenchmarkservicein2022 AT guijarroclarkec thequestfororthologsorthologybenchmarkservicein2022 AT theopenebenchteamthequestfororthologsconsortium thequestfororthologsorthologybenchmarkservicein2022 AT iwasakiw thequestfororthologsorthologybenchmarkservicein2022 AT lecompteo thequestfororthologsorthologybenchmarkservicein2022 AT sonnhammere thequestfororthologsorthologybenchmarkservicein2022 AT roosds thequestfororthologsorthologybenchmarkservicein2022 AT gabaldont thequestfororthologsorthologybenchmarkservicein2022 AT thybertd thequestfororthologsorthologybenchmarkservicein2022 AT thomaspd thequestfororthologsorthologybenchmarkservicein2022 AT emmsdm thequestfororthologsorthologybenchmarkservicein2022 AT neversy questfororthologsorthologybenchmarkservicein2022 AT jonestem questfororthologsorthologybenchmarkservicein2022 AT jyothid questfororthologsorthologybenchmarkservicein2022 AT yatesb questfororthologsorthologybenchmarkservicein2022 AT ferretm questfororthologsorthologybenchmarkservicein2022 AT portellsilval questfororthologsorthologybenchmarkservicein2022 AT codol questfororthologsorthologybenchmarkservicein2022 AT cosentinos questfororthologsorthologybenchmarkservicein2022 AT marcethoubenm questfororthologsorthologybenchmarkservicein2022 AT vlasovaa questfororthologsorthologybenchmarkservicein2022 AT poidevinl questfororthologsorthologybenchmarkservicein2022 AT kressa questfororthologsorthologybenchmarkservicein2022 AT hickmanm questfororthologsorthologybenchmarkservicein2022 AT perssone questfororthologsorthologybenchmarkservicein2022 AT pilizotai questfororthologsorthologybenchmarkservicein2022 AT guijarroclarkec questfororthologsorthologybenchmarkservicein2022 AT theopenebenchteamthequestfororthologsconsortium questfororthologsorthologybenchmarkservicein2022 AT iwasakiw questfororthologsorthologybenchmarkservicein2022 AT lecompteo questfororthologsorthologybenchmarkservicein2022 AT sonnhammere questfororthologsorthologybenchmarkservicein2022 AT roosds questfororthologsorthologybenchmarkservicein2022 AT gabaldont questfororthologsorthologybenchmarkservicein2022 AT thybertd questfororthologsorthologybenchmarkservicein2022 AT thomaspd questfororthologsorthologybenchmarkservicein2022 AT emmsdm questfororthologsorthologybenchmarkservicein2022 |