Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

Several bioinformatics genotyping algorithms are now commonly used to characterize antimicrobial resistance (AMR) gene profiles in whole-genome sequencing (WGS) data, with a view to understanding AMR epidemiology and developing resistance prediction workflows using WGS in clinical settings. Accurate...

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Bibliographic Details
Main Authors: Davies, TJ, Swann, J, Sheppard, AE, Pickford, H, Lipworth, S, AbuOun, M, Ellington, MJ, Fowler, PW, Hopkins, S, Hopkins, KL, Crook, DW, Peto, TEA, Anjum, MF, Walker, AS, Stoesser, N
Format: Journal article
Language:English
Published: Microbiology Society 2023

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