RNA2HLA: HLA-based quality control of RNA-seq datasets

RNA2HLA: HLA-based quality control of RNA-seq datasets

RNA-sequencing (RNA-seq) is a widely used approach for accessing the transcriptome in biomedical research. Studies frequently include multiple samples taken from the same individual at various time points or under different conditions, correct assignment of those samples to each particular participa...

Бүрэн тодорхойлолт

Номзүйн дэлгэрэнгүй
Үндсэн зохиолчид:	Chelysheva, I, Pollard, AJ, O’Connor, D
Формат:	Journal article
Хэл сонгох:	English
Хэвлэсэн:	Oxford University Press 2021

Ижил төстэй зүйлс

Correction: HLA Haplotyping from RNA-seq Data Using Hierarchical Read Weighting.
Хэвлэсэн: (2014-01-01)

Correction: HLA Haplotyping from RNA-seq Data Using Hierarchical Read Weighting
Хэвлэсэн: (2014-01-01)

MiRNA-mediated control of HLA-G expression and function.
-н: Irit Manaster, зэрэг
Хэвлэсэн: (2012-01-01)

HLA diversity in the 1000 genomes dataset.
-н: Pierre-Antoine Gourraud, зэрэг
Хэвлэсэн: (2014-01-01)

Expressions of HLA Class II Genes in Cutaneous Melanoma Were Associated with Clinical Outcome: Bioinformatics Approaches and Systematic Analysis of Public Microarray and RNA-Seq Datasets
-н: Yang-Yi Chen, зэрэг
Хэвлэсэн: (2019-06-01)

Tetrameric complexes of HLA-E, HLA-F, and HLA-G.
-н: Allan, D, зэрэг
Хэвлэсэн: (2002)

HLAProfiler utilizes k-mer profiles to improve HLA calling accuracy for rare and common alleles in RNA-seq data
-н: Martin L. Buchkovich, зэрэг
Хэвлэсэн: (2017-09-01)

Diversity in the HLA-I Recognition of HLA-F Monoclonal Antibodies: HLA-F or HLA-Ib Monospecific, HLA-E or HLA-G Bispecific Antibodies with or without HLA-Ia Reactivity
-н: Mepur H. Ravindranath, зэрэг
Хэвлэсэн: (2024-01-01)

RNA splicing analysis using heterogeneous and large RNA-seq datasets
-н: Jorge Vaquero-Garcia, зэрэг
Хэвлэсэн: (2023-03-01)

O sistema HLA <br>The HLA
-н: Aldo Waldrigues
Хэвлэсэн: (1981-11-01)

Discovery of protein-lncRNA interactions by integrating large-scale CLIP-Seq and RNA-Seq datasets
-н: Jun-Hao eLi, зэрэг
Хэвлэсэн: (2015-01-01)

MicroRNA Variants and HLA-miRNA Interactions are Novel Rheumatoid Arthritis Susceptibility Factors
-н: Shicheng Guo, зэрэг
Хэвлэсэн: (2021-10-01)

HLA*LA—HLA typing from linearly projected graph alignments
-н: Dilthey, AT, зэрэг
Хэвлэсэн: (2019)

High resolution allele frequency analysis of HLA-A, HLA-B, HLA-DRB1, HLA-C, HLA-DQB1 and HLA-DPB1 in Guangdong Cord Blood Bank
-н: RUI Derong, зэрэг
Хэвлэсэн: (2024-11-01)

Processing single-cell RNA-seq datasets using SingCellaR
-н: Wang, G, зэрэг
Хэвлэсэн: (2022)

An Expanded Role for HLA Genes: HLA-B Encodes a microRNA that Regulates IgA and Other Immune Response Transcripts
-н: Nilesh Chitnis, зэрэг
Хэвлэсэн: (2017-05-01)

Chapter 1 HLA-Mediated Control of HIV and HIV Adaptation to HLA
-н: Payne, R, зэрэг
Хэвлэсэн: (2009)

Structure and function of the human MHC class Ib molecules HLA-E, HLA-F and HLA-G.
-н: O'Callaghan, C, зэрэг
Хэвлэсэн: (1998)

Spotlight on systems vaccinology: a novel approach to elucidate correlates of protection
-н: Zhu, H, зэрэг
Хэвлэсэн: (2023)

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure
-н: John A. Hadish, зэрэг
Хэвлэсэн: (2022-05-01)

Targeted RNA-Based Oxford Nanopore Sequencing for Typing 12 Classical HLA Genes
-н: Tiira Johansson, зэрэг
Хэвлэсэн: (2021-03-01)

HLA and non-HLA polymorphisms in renal transplantation
-н: Stéphanie Laperrousaz, зэрэг
Хэвлэсэн: (2012-08-01)

Identification of a novel HLA-A2 subtype, HLA-A*0216.
-н: Barouch, D, зэрэг
Хэвлэсэн: (1995)

High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq)
-н: Yang Jiao, зэрэг
Хэвлэсэн: (2018-01-01)

HLA-H: Transcriptional Activity and HLA-E Mobilization
-н: François Jordier, зэрэг
Хэвлэсэн: (2020-01-01)

Tuning of NK-Specific HLA-C Expression by Alternative mRNA Splicing
-н: Frederick J. Goodson-Gregg, зэрэг
Хэвлэсэн: (2020-01-01)

Statistical HLA type imputation from large and heterogeneous datasets
-н: Dilthey, A
Хэвлэсэн: (2012)

DIFFERENTIAL IMPACT OF HLA-A, HLA-B AND HLA-DR COMPATIBILITY ON THE RENAL ALLOGRAFT SURVIVAL
-н: V. Y. Abramov, зэрэг
Хэвлэсэн: (2012-09-01)

Antigens HLA-G, sHLA- G and sHLA- class I in reproductive failure.
-н: Tomasz Plonka, зэрэг
Хэвлэсэн: (2008-04-01)

The Molecular Origin and Consequences of Escape from miRNA Regulation by HLA-C Alleles
-н: O'hUigin, Colm, зэрэг
Хэвлэсэн: (2011)

Integrated analysis of single‐cell RNA‐seq dataset and bulk RNA‐seq dataset constructs a prognostic model for predicting survival in human glioblastoma
-н: Wenwen Lai, зэрэг
Хэвлэсэн: (2022-05-01)

Symposium 6: HLA and Non-HLA genetic predisposition
-н: Gloria Cerrone
Хэвлэсэн: (2020-11-01)

Elevated neoantigen levels in tumors with somatic mutations in the HLA-A, HLA-B, HLA-C and B2M genes
-н: Andrea Castro, зэрэг
Хэвлэсэн: (2019-07-01)

Identification of presented SARS-CoV-2 HLA class I and HLA class II peptides using HLA peptidomics
-н: Adi Nagler, зэрэг
Хэвлэсэн: (2021-06-01)

IDENTIFICATION OF A NOVEL HLA-A2 SUBTYPE, HLA-A-ASTERISK-0216
-н: Barouch, D, зэрэг
Хэвлэсэн: (1995)

HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression
-н: Tiira Johansson, зэрэг
Хэвлэсэн: (2021-02-01)

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets
-н: Inbal Shainer, зэрэг
Хэвлэсэн: (2021-09-01)

RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data
-н: Qian Zhou, зэрэг
Хэвлэсэн: (2018-02-01)

Revisiting the Influence of HLA-type, Frequency, HLA-supertype and Homozygosity on the Immune Control of HIV
-н: Leslie, A, зэрэг
Хэвлэсэн: (2008)

RNA-Seq dataset generated from stimulation of cultured Tc2 cells
-н: Hoyle, R
Хэвлэсэн: (2021)