MOST: a modified MLST typing tool based on short read sequencing

MOST: a modified MLST typing tool based on short read sequencing

Multilocus sequence typing (MLST) is an effective method to describe bacterial populations. Conventionally, MLST involves Polymerase Chain Reaction (PCR) amplification of housekeeping genes followed by Sanger DNA sequencing. Public Health England (PHE) is in the process of replacing the conventional...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Tewolde, R, Dallman, T, Schaefer, U, Sheppard, C, Ashton, P, Pichon, B, Ellington, M, Swift, C, Green, J, Underwood, A
Fformat:	Journal article
Iaith:	English
Cyhoeddwyd:	PeerJ 2016

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Identification of Salmonella for public health surveillance using whole genome sequencing
gan: Ashton, P, et al.
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mlstdbNet – distributed multi-locus sequence typing (MLST) databases
gan: Maiden Martin CJ, et al.
Cyhoeddwyd: (2004-07-01)

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gan: Blanchard, A, et al.
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gan: Gaiarsa, S, et al.
Cyhoeddwyd: (2019)

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gan: Stefano Gaiarsa, et al.
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gan: Adam M. Blanchard, et al.
Cyhoeddwyd: (2018-03-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species
gan: Boonsilp, S, et al.
Cyhoeddwyd: (2013)

Short read sequence typing (SRST): multi-locus sequence types from short reads
gan: Inouye Michael, et al.
Cyhoeddwyd: (2012-07-01)

Campylobacter from retail poultry: MLST analysis and the origin of human infection
gan: Sheppard, S, et al.
Cyhoeddwyd: (2007)

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gan: Cheng Yang, et al.
Cyhoeddwyd: (2021-04-01)

Unlocking short read sequencing for metagenomics.
gan: Sébastien Rodrigue, et al.
Cyhoeddwyd: (2010-07-01)

refMLST: reference-based multilocus sequence typing enables universal bacterial typing
gan: Mondher Khdhiri, et al.
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gan: Carmen Costache, et al.
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A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species.
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Generation of diversity in Streptococcus mutans genes demonstrated by MLST.
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cgMLST@Taiwan: A web service platform for Vibrio cholerae cgMLST profiling and global strain tracking
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gan: Chisholm, Sallie (Penny), et al.
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SimMLST: simulation of multi-locus sequence typing data under a neutral model.
gan: Didelot, X, et al.
Cyhoeddwyd: (2009)

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gan: Madslien Elisabeth H, et al.
Cyhoeddwyd: (2012-10-01)

Multilocus sequence typing (MLST) for lineage assignment and high resolution diversity studies in Trypanosoma cruzi.
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Cyhoeddwyd: (2011-06-01)

Correction to: First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
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MLST clustering of Campylobacter jejuni isolates from patients with gastroenteritis, reactive arthritis and Guillain-Barre syndrome.
gan: Nielsen, L, et al.
Cyhoeddwyd: (2010)

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
gan: James A Stapleton, et al.
Cyhoeddwyd: (2016-01-01)

PubMLST.org – The new home for the Borrelia MLSA database
gan: Margos, G, et al.
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MLST revisited: the gene-by-gene approach to bacterial genomics.
gan: Maiden, M, et al.
Cyhoeddwyd: (2013)

Core Genome MLST for Source Attribution of Campylobacter coli
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Targeted assembly of short sequence reads.
gan: René L Warren, et al.
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