MOST: a modified MLST typing tool based on short read sequencing

MOST: a modified MLST typing tool based on short read sequencing

Multilocus sequence typing (MLST) is an effective method to describe bacterial populations. Conventionally, MLST involves Polymerase Chain Reaction (PCR) amplification of housekeeping genes followed by Sanger DNA sequencing. Public Health England (PHE) is in the process of replacing the conventional...

Full description

Bibliographic Details
Main Authors:	Tewolde, R, Dallman, T, Schaefer, U, Sheppard, C, Ashton, P, Pichon, B, Ellington, M, Swift, C, Green, J, Underwood, A
Format:	Journal article
Language:	English
Published:	PeerJ 2016

Similar Items

MOST: a modified MLST typing tool based on short read sequencing
by: Rediat Tewolde, et al.
Published: (2016-08-01)

Identification of Salmonella for public health surveillance using whole genome sequencing
by: Ashton, P, et al.
Published: (2016)

mlstdbNet – distributed multi-locus sequence typing (MLST) databases
by: Maiden Martin CJ, et al.
Published: (2004-07-01)

Comparing core-genome MLST with PFGE and MLST for cluster analysis of carbapenem-resistant Acinetobacter baumannii
by: Tingting Li, et al.
Published: (2022-09-01)

The applied development of a tiered multilocus sequence typing (MLST) scheme for Dichelobacter nodosus
by: Blanchard, A, et al.
Published: (2018)

Comparative analysis of the two Acinetobacter baumannii multilocus sequence typing (MLST) schemes
by: Gaiarsa, S, et al.
Published: (2019)

Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes
by: Stefano Gaiarsa, et al.
Published: (2019-05-01)

The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for Dichelobacter nodosus
by: Adam M. Blanchard, et al.
Published: (2018-03-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species
by: Boonsilp, S, et al.
Published: (2013)

Short read sequence typing (SRST): multi-locus sequence types from short reads
by: Inouye Michael, et al.
Published: (2012-07-01)

Campylobacter from retail poultry: MLST analysis and the origin of human infection
by: Sheppard, S, et al.
Published: (2007)

Subtyping Salmonella isolated from pet dogs with multilocus sequence typing (MLST) and clustered regularly interspaced short palindromic repeats (CRISPRs)
by: Cheng Yang, et al.
Published: (2021-04-01)

Unlocking short read sequencing for metagenomics.
by: Sébastien Rodrigue, et al.
Published: (2010-07-01)

refMLST: reference-based multilocus sequence typing enables universal bacterial typing
by: Mondher Khdhiri, et al.
Published: (2024-08-01)

Assessment of genetic markers for multilocus sequence typing (MLST) of Fasciola isolates from Iran
by: Naser Nazari, et al.
Published: (2023-03-01)

First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
by: Carmen Costache, et al.
Published: (2020-07-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species.
by: Siriphan Boonsilp, et al.
Published: (2013-01-01)

Generation of diversity in Streptococcus mutans genes demonstrated by MLST.
by: Thuy Do, et al.
Published: (2010-02-01)

cgMLST@Taiwan: A web service platform for Vibrio cholerae cgMLST profiling and global strain tracking
by: Yi-Syong Chen, et al.
Published: (2022-02-01)

Serotyping, MLST, and Core Genome MLST Analysis of Salmonella enterica From Different Sources in China During 2004–2019
by: Shigan Yan, et al.
Published: (2021-09-01)

Application of MLST and pilus gene sequence comparisons to investigate the population structures of Actinomyces naeslundii and Actinomyces oris.
by: Uta Henssge, et al.
Published: (2011-01-01)

Unlocking Short Read Sequencing for Metagenomics
by: Chisholm, Sallie (Penny), et al.
Published: (2010)

SimMLST: simulation of multi-locus sequence typing data under a neutral model.
by: Didelot, X, et al.
Published: (2009)

Genotyping of <it>B. licheniformis</it> based on a novel multi-locus sequence typing (MLST) scheme
by: Madslien Elisabeth H, et al.
Published: (2012-10-01)

Multilocus sequence typing (MLST) for lineage assignment and high resolution diversity studies in Trypanosoma cruzi.
by: Matthew Yeo, et al.
Published: (2011-06-01)

Correction to: First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
by: Carmen Costache, et al.
Published: (2021-06-01)

FastMLST: A Multi-core Tool for Multilocus Sequence Typing of Draft Genome Assemblies
by: Enzo Guerrero-Araya, et al.
Published: (2021-11-01)

Exploring the diversity of Arcobacter butzleri from cattle in the UK using MLST and whole genome sequencing.
by: J Yvette Merga, et al.
Published: (2013-01-01)

MLST clustering of Campylobacter jejuni isolates from patients with gastroenteritis, reactive arthritis and Guillain-Barre syndrome.
by: Nielsen, L, et al.
Published: (2010)

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
by: James A Stapleton, et al.
Published: (2016-01-01)

PubMLST.org – The new home for the Borrelia MLSA database
by: Margos, G, et al.
Published: (2015)

Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China
by: Yuan Yuan Wang, et al.
Published: (2023-03-01)

Multiple mitochondrial introgression events and heteroplasmy in trypanosoma cruzi revealed by maxicircle MLST and next generation sequencing.
by: Louisa A Messenger, et al.
Published: (2012-01-01)

Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping
by: Maud Gits-Muselli, et al.
Published: (2020-01-01)

DNA-Sequence Based Typing of the Cronobacter Genus Using MLST, CRISPR-cas Array and Capsular Profiling
by: Pauline Ogrodzki, et al.
Published: (2017-09-01)

An Extended Multilocus Sequence Typing (MLST) Scheme for Rapid Direct Typing of Leptospira from Clinical Samples.
by: Sabrina Weiss, et al.
Published: (2016-09-01)

MLST revisited: the gene-by-gene approach to bacterial genomics.
by: Maiden, M, et al.
Published: (2013)

Core Genome MLST for Source Attribution of Campylobacter coli
by: Lucas Harrison, et al.
Published: (2021-07-01)

Comparative analysis of IR-Biotyper, MLST, cgMLST, and WGS for clustering of vancomycin-resistant Enterococcus faecium in a neonatal intensive care unit
by: Sunggyun Park, et al.
Published: (2024-04-01)

Targeted assembly of short sequence reads.
by: René L Warren, et al.
Published: (2011-01-01)