MOST: a modified MLST typing tool based on short read sequencing

MOST: a modified MLST typing tool based on short read sequencing

Multilocus sequence typing (MLST) is an effective method to describe bacterial populations. Conventionally, MLST involves Polymerase Chain Reaction (PCR) amplification of housekeeping genes followed by Sanger DNA sequencing. Public Health England (PHE) is in the process of replacing the conventional...

Deskribapen osoa

Xehetasun bibliografikoak
Egile Nagusiak:	Tewolde, R, Dallman, T, Schaefer, U, Sheppard, C, Ashton, P, Pichon, B, Ellington, M, Swift, C, Green, J, Underwood, A
Formatua:	Journal article
Hizkuntza:	English
Argitaratua:	PeerJ 2016

Antzeko izenburuak

MOST: a modified MLST typing tool based on short read sequencing
nork: Rediat Tewolde, et al.
Argitaratua: (2016-08-01)

Identification of Salmonella for public health surveillance using whole genome sequencing
nork: Ashton, P, et al.
Argitaratua: (2016)

mlstdbNet – distributed multi-locus sequence typing (MLST) databases
nork: Maiden Martin CJ, et al.
Argitaratua: (2004-07-01)

Comparing core-genome MLST with PFGE and MLST for cluster analysis of carbapenem-resistant Acinetobacter baumannii
nork: Tingting Li, et al.
Argitaratua: (2022-09-01)

The applied development of a tiered multilocus sequence typing (MLST) scheme for Dichelobacter nodosus
nork: Blanchard, A, et al.
Argitaratua: (2018)

Comparative analysis of the two Acinetobacter baumannii multilocus sequence typing (MLST) schemes
nork: Gaiarsa, S, et al.
Argitaratua: (2019)

Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes
nork: Stefano Gaiarsa, et al.
Argitaratua: (2019-05-01)

The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for Dichelobacter nodosus
nork: Adam M. Blanchard, et al.
Argitaratua: (2018-03-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species
nork: Boonsilp, S, et al.
Argitaratua: (2013)

Short read sequence typing (SRST): multi-locus sequence types from short reads
nork: Inouye Michael, et al.
Argitaratua: (2012-07-01)

Campylobacter from retail poultry: MLST analysis and the origin of human infection
nork: Sheppard, S, et al.
Argitaratua: (2007)

Subtyping Salmonella isolated from pet dogs with multilocus sequence typing (MLST) and clustered regularly interspaced short palindromic repeats (CRISPRs)
nork: Cheng Yang, et al.
Argitaratua: (2021-04-01)

Unlocking short read sequencing for metagenomics.
nork: Sébastien Rodrigue, et al.
Argitaratua: (2010-07-01)

refMLST: reference-based multilocus sequence typing enables universal bacterial typing
nork: Mondher Khdhiri, et al.
Argitaratua: (2024-08-01)

Assessment of genetic markers for multilocus sequence typing (MLST) of Fasciola isolates from Iran
nork: Naser Nazari, et al.
Argitaratua: (2023-03-01)

First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
nork: Carmen Costache, et al.
Argitaratua: (2020-07-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species.
nork: Siriphan Boonsilp, et al.
Argitaratua: (2013-01-01)

Generation of diversity in Streptococcus mutans genes demonstrated by MLST.
nork: Thuy Do, et al.
Argitaratua: (2010-02-01)

cgMLST@Taiwan: A web service platform for Vibrio cholerae cgMLST profiling and global strain tracking
nork: Yi-Syong Chen, et al.
Argitaratua: (2022-02-01)

Serotyping, MLST, and Core Genome MLST Analysis of Salmonella enterica From Different Sources in China During 2004–2019
nork: Shigan Yan, et al.
Argitaratua: (2021-09-01)

Application of MLST and pilus gene sequence comparisons to investigate the population structures of Actinomyces naeslundii and Actinomyces oris.
nork: Uta Henssge, et al.
Argitaratua: (2011-01-01)

Unlocking Short Read Sequencing for Metagenomics
nork: Chisholm, Sallie (Penny), et al.
Argitaratua: (2010)

SimMLST: simulation of multi-locus sequence typing data under a neutral model.
nork: Didelot, X, et al.
Argitaratua: (2009)

Genotyping of <it>B. licheniformis</it> based on a novel multi-locus sequence typing (MLST) scheme
nork: Madslien Elisabeth H, et al.
Argitaratua: (2012-10-01)

Multilocus sequence typing (MLST) for lineage assignment and high resolution diversity studies in Trypanosoma cruzi.
nork: Matthew Yeo, et al.
Argitaratua: (2011-06-01)

Correction to: First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
nork: Carmen Costache, et al.
Argitaratua: (2021-06-01)

FastMLST: A Multi-core Tool for Multilocus Sequence Typing of Draft Genome Assemblies
nork: Enzo Guerrero-Araya, et al.
Argitaratua: (2021-11-01)

Exploring the diversity of Arcobacter butzleri from cattle in the UK using MLST and whole genome sequencing.
nork: J Yvette Merga, et al.
Argitaratua: (2013-01-01)

MLST clustering of Campylobacter jejuni isolates from patients with gastroenteritis, reactive arthritis and Guillain-Barre syndrome.
nork: Nielsen, L, et al.
Argitaratua: (2010)

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
nork: James A Stapleton, et al.
Argitaratua: (2016-01-01)

PubMLST.org – The new home for the Borrelia MLSA database
nork: Margos, G, et al.
Argitaratua: (2015)

Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China
nork: Yuan Yuan Wang, et al.
Argitaratua: (2023-03-01)

Multiple mitochondrial introgression events and heteroplasmy in trypanosoma cruzi revealed by maxicircle MLST and next generation sequencing.
nork: Louisa A Messenger, et al.
Argitaratua: (2012-01-01)

Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping
nork: Maud Gits-Muselli, et al.
Argitaratua: (2020-01-01)

DNA-Sequence Based Typing of the Cronobacter Genus Using MLST, CRISPR-cas Array and Capsular Profiling
nork: Pauline Ogrodzki, et al.
Argitaratua: (2017-09-01)

An Extended Multilocus Sequence Typing (MLST) Scheme for Rapid Direct Typing of Leptospira from Clinical Samples.
nork: Sabrina Weiss, et al.
Argitaratua: (2016-09-01)

MLST revisited: the gene-by-gene approach to bacterial genomics.
nork: Maiden, M, et al.
Argitaratua: (2013)

Core Genome MLST for Source Attribution of Campylobacter coli
nork: Lucas Harrison, et al.
Argitaratua: (2021-07-01)

Comparative analysis of IR-Biotyper, MLST, cgMLST, and WGS for clustering of vancomycin-resistant Enterococcus faecium in a neonatal intensive care unit
nork: Sunggyun Park, et al.
Argitaratua: (2024-04-01)

Targeted assembly of short sequence reads.
nork: René L Warren, et al.
Argitaratua: (2011-01-01)