MOST: a modified MLST typing tool based on short read sequencing

MOST: a modified MLST typing tool based on short read sequencing

Multilocus sequence typing (MLST) is an effective method to describe bacterial populations. Conventionally, MLST involves Polymerase Chain Reaction (PCR) amplification of housekeeping genes followed by Sanger DNA sequencing. Public Health England (PHE) is in the process of replacing the conventional...

Volledige beschrijving

Bibliografische gegevens
Hoofdauteurs:	Tewolde, R, Dallman, T, Schaefer, U, Sheppard, C, Ashton, P, Pichon, B, Ellington, M, Swift, C, Green, J, Underwood, A
Formaat:	Journal article
Taal:	English
Gepubliceerd in:	PeerJ 2016

Gelijkaardige items

MOST: a modified MLST typing tool based on short read sequencing
door: Rediat Tewolde, et al.
Gepubliceerd in: (2016-08-01)

Identification of Salmonella for public health surveillance using whole genome sequencing
door: Ashton, P, et al.
Gepubliceerd in: (2016)

mlstdbNet – distributed multi-locus sequence typing (MLST) databases
door: Maiden Martin CJ, et al.
Gepubliceerd in: (2004-07-01)

Comparing core-genome MLST with PFGE and MLST for cluster analysis of carbapenem-resistant Acinetobacter baumannii
door: Tingting Li, et al.
Gepubliceerd in: (2022-09-01)

The applied development of a tiered multilocus sequence typing (MLST) scheme for Dichelobacter nodosus
door: Blanchard, A, et al.
Gepubliceerd in: (2018)

Comparative analysis of the two Acinetobacter baumannii multilocus sequence typing (MLST) schemes
door: Gaiarsa, S, et al.
Gepubliceerd in: (2019)

Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes
door: Stefano Gaiarsa, et al.
Gepubliceerd in: (2019-05-01)

The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for Dichelobacter nodosus
door: Adam M. Blanchard, et al.
Gepubliceerd in: (2018-03-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species
door: Boonsilp, S, et al.
Gepubliceerd in: (2013)

Short read sequence typing (SRST): multi-locus sequence types from short reads
door: Inouye Michael, et al.
Gepubliceerd in: (2012-07-01)

Campylobacter from retail poultry: MLST analysis and the origin of human infection
door: Sheppard, S, et al.
Gepubliceerd in: (2007)

Subtyping Salmonella isolated from pet dogs with multilocus sequence typing (MLST) and clustered regularly interspaced short palindromic repeats (CRISPRs)
door: Cheng Yang, et al.
Gepubliceerd in: (2021-04-01)

Unlocking short read sequencing for metagenomics.
door: Sébastien Rodrigue, et al.
Gepubliceerd in: (2010-07-01)

refMLST: reference-based multilocus sequence typing enables universal bacterial typing
door: Mondher Khdhiri, et al.
Gepubliceerd in: (2024-08-01)

Assessment of genetic markers for multilocus sequence typing (MLST) of Fasciola isolates from Iran
door: Naser Nazari, et al.
Gepubliceerd in: (2023-03-01)

First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
door: Carmen Costache, et al.
Gepubliceerd in: (2020-07-01)

A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species.
door: Siriphan Boonsilp, et al.
Gepubliceerd in: (2013-01-01)

Generation of diversity in Streptococcus mutans genes demonstrated by MLST.
door: Thuy Do, et al.
Gepubliceerd in: (2010-02-01)

cgMLST@Taiwan: A web service platform for Vibrio cholerae cgMLST profiling and global strain tracking
door: Yi-Syong Chen, et al.
Gepubliceerd in: (2022-02-01)

Serotyping, MLST, and Core Genome MLST Analysis of Salmonella enterica From Different Sources in China During 2004–2019
door: Shigan Yan, et al.
Gepubliceerd in: (2021-09-01)

Application of MLST and pilus gene sequence comparisons to investigate the population structures of Actinomyces naeslundii and Actinomyces oris.
door: Uta Henssge, et al.
Gepubliceerd in: (2011-01-01)

Unlocking Short Read Sequencing for Metagenomics
door: Chisholm, Sallie (Penny), et al.
Gepubliceerd in: (2010)

SimMLST: simulation of multi-locus sequence typing data under a neutral model.
door: Didelot, X, et al.
Gepubliceerd in: (2009)

Genotyping of <it>B. licheniformis</it> based on a novel multi-locus sequence typing (MLST) scheme
door: Madslien Elisabeth H, et al.
Gepubliceerd in: (2012-10-01)

Multilocus sequence typing (MLST) for lineage assignment and high resolution diversity studies in Trypanosoma cruzi.
door: Matthew Yeo, et al.
Gepubliceerd in: (2011-06-01)

Correction to: First multilocus sequence typing (MLST) of Giardia duodenalis isolates from humans in Romania
door: Carmen Costache, et al.
Gepubliceerd in: (2021-06-01)

FastMLST: A Multi-core Tool for Multilocus Sequence Typing of Draft Genome Assemblies
door: Enzo Guerrero-Araya, et al.
Gepubliceerd in: (2021-11-01)

Exploring the diversity of Arcobacter butzleri from cattle in the UK using MLST and whole genome sequencing.
door: J Yvette Merga, et al.
Gepubliceerd in: (2013-01-01)

MLST clustering of Campylobacter jejuni isolates from patients with gastroenteritis, reactive arthritis and Guillain-Barre syndrome.
door: Nielsen, L, et al.
Gepubliceerd in: (2010)

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
door: James A Stapleton, et al.
Gepubliceerd in: (2016-01-01)

PubMLST.org – The new home for the Borrelia MLSA database
door: Margos, G, et al.
Gepubliceerd in: (2015)

Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China
door: Yuan Yuan Wang, et al.
Gepubliceerd in: (2023-03-01)

Multiple mitochondrial introgression events and heteroplasmy in trypanosoma cruzi revealed by maxicircle MLST and next generation sequencing.
door: Louisa A Messenger, et al.
Gepubliceerd in: (2012-01-01)

Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping
door: Maud Gits-Muselli, et al.
Gepubliceerd in: (2020-01-01)

DNA-Sequence Based Typing of the Cronobacter Genus Using MLST, CRISPR-cas Array and Capsular Profiling
door: Pauline Ogrodzki, et al.
Gepubliceerd in: (2017-09-01)

An Extended Multilocus Sequence Typing (MLST) Scheme for Rapid Direct Typing of Leptospira from Clinical Samples.
door: Sabrina Weiss, et al.
Gepubliceerd in: (2016-09-01)

MLST revisited: the gene-by-gene approach to bacterial genomics.
door: Maiden, M, et al.
Gepubliceerd in: (2013)

Core Genome MLST for Source Attribution of Campylobacter coli
door: Lucas Harrison, et al.
Gepubliceerd in: (2021-07-01)

Comparative analysis of IR-Biotyper, MLST, cgMLST, and WGS for clustering of vancomycin-resistant Enterococcus faecium in a neonatal intensive care unit
door: Sunggyun Park, et al.
Gepubliceerd in: (2024-04-01)

Targeted assembly of short sequence reads.
door: René L Warren, et al.
Gepubliceerd in: (2011-01-01)