Rapid genotype imputation from sequence without reference panels

Rapid genotype imputation from sequence without reference panels

Inexpensive genotyping methods are essential for genetic studies requiring large sample sizes. In human studies, array-based microarrays and high-density haplotype reference panels allow efficient genotype imputation for this purpose. However, these resources are typically unavailable in non-human s...

Πλήρης περιγραφή

Λεπτομέρειες βιβλιογραφικής εγγραφής
Κύριοι συγγραφείς:	Myers, S, Davies, R, Flint, J, Mott, R
Μορφή:	Journal article
Έκδοση:	Nature Publishing Group 2016

Παρόμοια τεκμήρια

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ανά: Davies, RW, κ.ά.
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A reference panel of 64,976 haplotypes for genotype imputation
ανά: Kretzschmar, W, κ.ά.
Έκδοση: (2016)

Development and validation of a horse reference panel for genotype imputation
ανά: Paula Reich, κ.ά.
Έκδοση: (2022-07-01)

PHARP: a pig haplotype reference panel for genotype imputation
ανά: Zhen Wang, κ.ά.
Έκδοση: (2022-07-01)

Rapid, Reference-Free human genotype imputation with denoising autoencoders
ανά: Raquel Dias, κ.ά.
Έκδοση: (2022-09-01)

A genotype imputation reference panel specific for native Southeast Asian populations
ανά: Alvin Cengnata, κ.ά.
Έκδοση: (2024-10-01)

Author Correction: PHARP: a pig haplotype reference panel for genotype imputation
ανά: Zhen Wang, κ.ά.
Έκδοση: (2022-08-01)

A population-specific reference panel for improved genotype imputation in African Americans
ανά: Jared O’Connell, κ.ά.
Έκδοση: (2021-11-01)

Comparison of genotype imputation strategies using a combined reference panel for chicken population
ανά: S. Ye, κ.ά.
Έκδοση: (2019-01-01)

Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants
ανά: Adrien M. Butty, κ.ά.
Έκδοση: (2019-05-01)

Genotype Imputation for Latinos Using the HapMap and 1000 Genomes Project Reference Panels
ανά: Xiaoyi eGao, κ.ά.
Έκδοση: (2012-06-01)

A rapid and reference-free imputation method for low-cost genotyping platforms
ανά: Vinh Chi Duong, κ.ά.
Έκδοση: (2023-12-01)

A diverse ancestrally-matched reference panel increases genotype imputation accuracy in a underrepresented population
ανά: John Mauleekoonphairoj, κ.ά.
Έκδοση: (2023-07-01)

Development and evaluation of a haplotype reference panel for low-coverage whole genome sequencing genotype imputation in turbot (Scophthalmus maximus)
ανά: Junwen Cao, κ.ά.
Έκδοση: (2025-04-01)

MergeReference: A Tool for Merging Reference Panels for HLA Imputation
ανά: Seungho Cook, κ.ά.
Έκδοση: (2017-09-01)

The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle
ανά: Audald Lloret-Villas, κ.ά.
Έκδοση: (2023-05-01)

How local reference panels improve imputation in French populations
ανά: Anthony F. Herzig, κ.ά.
Έκδοση: (2024-01-01)

Reconstruction of private genomes through reference-based genotype imputation
ανά: Matthew J. Mosca, κ.ά.
Έκδοση: (2023-12-01)

Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references.
ανά: Hadi Alipour, κ.ά.
Έκδοση: (2019-01-01)

Utilizing genotype imputation for the augmentation of sequence data.
ανά: Brooke L Fridley, κ.ά.
Έκδοση: (2010-06-01)

Genotype Imputation
ανά: Marchini, J
Έκδοση: (2011)

A globally diverse reference alignment and panel for imputation of mitochondrial DNA variants
ανά: Tim W. McInerney, κ.ά.
Έκδοση: (2021-09-01)

Inclusion of Population-specific Reference Panel from India to the 1000 Genomes Phase 3 Panel Improves Imputation Accuracy
ανά: Meraj Ahmad, κ.ά.
Έκδοση: (2017-07-01)

Evaluation of imputation performance of multiple reference panels in a Pakistani population
ανά: Jiayi Xu, κ.ά.
Έκδοση: (2025-04-01)

Imputation of missing genotypes: an empirical evaluation of IMPUTE
ανά: Steinberg Martin H, κ.ά.
Έκδοση: (2008-12-01)

Genotype imputation strategies for Portuguese Holstein cattle using different SNP panels
ανά: Alessandra Alves Silva, κ.ά.
Έκδοση: (2019-09-01)

A reference haplotype panel for genome-wide imputation of short tandem repeats
ανά: Shubham Saini, κ.ά.
Έκδοση: (2018-10-01)

Rare Variants Imputation in Admixed Populations: Comparison Across Reference Panels and Bioinformatics Tools
ανά: Sanjeev Sariya, κ.ά.
Έκδοση: (2019-04-01)

Comparing algorithms for genotype imputation.
ανά: Marchini, J, κ.ά.
Έκδοση: (2008)

Genotype imputation with thousands of genomes.
ανά: Howie, B, κ.ά.
Έκδοση: (2011)

Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel
ανά: Mitt, Mario, κ.ά.
Έκδοση: (2018)

Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project
ανά: Jun Yasuda, κ.ά.
Έκδοση: (2018-07-01)

Novel methods for genotype imputation to whole-genome sequence and a simple linear model to predict imputation accuracy
ανά: Steven G. Larmer, κ.ά.
Έκδοση: (2017-12-01)

Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
ανά: Huang, J, κ.ά.
Έκδοση: (2015)

Comparison of multiple imputation and other methods for the analysis of imputed genotypes
ανά: Paul L. Auer, κ.ά.
Έκδοση: (2023-06-01)

Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data.
ανά: Ariel W Chan, κ.ά.
Έκδοση: (2016-01-01)

Current software for genotype imputation
ανά: Ellinghaus David, κ.ά.
Έκδοση: (2009-07-01)

The SWine IMputation (SWIM) haplotype reference panel enables nucleotide resolution genetic mapping in pigs
ανά: Rongrong Ding, κ.ά.
Έκδοση: (2023-05-01)

The NBDC-DDBJ imputation server facilitates the use of controlled access reference panel datasets in Japan
ανά: Tsuyoshi Hachiya, κ.ά.
Έκδοση: (2022-12-01)

A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
ανά: Troy N. Rowan, κ.ά.
Έκδοση: (2019-12-01)