Rapid genotype imputation from sequence without reference panels

Rapid genotype imputation from sequence without reference panels

Inexpensive genotyping methods are essential for genetic studies requiring large sample sizes. In human studies, array-based microarrays and high-density haplotype reference panels allow efficient genotype imputation for this purpose. However, these resources are typically unavailable in non-human s...

書誌詳細
主要な著者:	Myers, S, Davies, R, Flint, J, Mott, R
フォーマット:	Journal article
出版事項:	Nature Publishing Group 2016

類似資料

Rapid genotype imputation from sequence with reference panels
著者:: Davies, RW, 等
出版事項: (2021)

A reference panel of 64,976 haplotypes for genotype imputation
著者:: Kretzschmar, W, 等
出版事項: (2016)

Development and validation of a horse reference panel for genotype imputation
著者:: Paula Reich, 等
出版事項: (2022-07-01)

PHARP: a pig haplotype reference panel for genotype imputation
著者:: Zhen Wang, 等
出版事項: (2022-07-01)

Rapid, Reference-Free human genotype imputation with denoising autoencoders
著者:: Raquel Dias, 等
出版事項: (2022-09-01)

A genotype imputation reference panel specific for native Southeast Asian populations
著者:: Alvin Cengnata, 等
出版事項: (2024-10-01)

Author Correction: PHARP: a pig haplotype reference panel for genotype imputation
著者:: Zhen Wang, 等
出版事項: (2022-08-01)

A population-specific reference panel for improved genotype imputation in African Americans
著者:: Jared O’Connell, 等
出版事項: (2021-11-01)

Comparison of genotype imputation strategies using a combined reference panel for chicken population
著者:: S. Ye, 等
出版事項: (2019-01-01)

Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants
著者:: Adrien M. Butty, 等
出版事項: (2019-05-01)

Genotype Imputation for Latinos Using the HapMap and 1000 Genomes Project Reference Panels
著者:: Xiaoyi eGao, 等
出版事項: (2012-06-01)

A rapid and reference-free imputation method for low-cost genotyping platforms
著者:: Vinh Chi Duong, 等
出版事項: (2023-12-01)

A diverse ancestrally-matched reference panel increases genotype imputation accuracy in a underrepresented population
著者:: John Mauleekoonphairoj, 等
出版事項: (2023-07-01)

Development and evaluation of a haplotype reference panel for low-coverage whole genome sequencing genotype imputation in turbot (Scophthalmus maximus)
著者:: Junwen Cao, 等
出版事項: (2025-04-01)

MergeReference: A Tool for Merging Reference Panels for HLA Imputation
著者:: Seungho Cook, 等
出版事項: (2017-09-01)

The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle
著者:: Audald Lloret-Villas, 等
出版事項: (2023-05-01)

How local reference panels improve imputation in French populations
著者:: Anthony F. Herzig, 等
出版事項: (2024-01-01)

Reconstruction of private genomes through reference-based genotype imputation
著者:: Matthew J. Mosca, 等
出版事項: (2023-12-01)

Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references.
著者:: Hadi Alipour, 等
出版事項: (2019-01-01)

Utilizing genotype imputation for the augmentation of sequence data.
著者:: Brooke L Fridley, 等
出版事項: (2010-06-01)

Genotype Imputation
著者:: Marchini, J
出版事項: (2011)

A globally diverse reference alignment and panel for imputation of mitochondrial DNA variants
著者:: Tim W. McInerney, 等
出版事項: (2021-09-01)

Inclusion of Population-specific Reference Panel from India to the 1000 Genomes Phase 3 Panel Improves Imputation Accuracy
著者:: Meraj Ahmad, 等
出版事項: (2017-07-01)

Evaluation of imputation performance of multiple reference panels in a Pakistani population
著者:: Jiayi Xu, 等
出版事項: (2025-04-01)

Imputation of missing genotypes: an empirical evaluation of IMPUTE
著者:: Steinberg Martin H, 等
出版事項: (2008-12-01)

Genotype imputation strategies for Portuguese Holstein cattle using different SNP panels
著者:: Alessandra Alves Silva, 等
出版事項: (2019-09-01)

A reference haplotype panel for genome-wide imputation of short tandem repeats
著者:: Shubham Saini, 等
出版事項: (2018-10-01)

Rare Variants Imputation in Admixed Populations: Comparison Across Reference Panels and Bioinformatics Tools
著者:: Sanjeev Sariya, 等
出版事項: (2019-04-01)

Comparing algorithms for genotype imputation.
著者:: Marchini, J, 等
出版事項: (2008)

Genotype imputation with thousands of genomes.
著者:: Howie, B, 等
出版事項: (2011)

Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel
著者:: Mitt, Mario, 等
出版事項: (2018)

Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project
著者:: Jun Yasuda, 等
出版事項: (2018-07-01)

Novel methods for genotype imputation to whole-genome sequence and a simple linear model to predict imputation accuracy
著者:: Steven G. Larmer, 等
出版事項: (2017-12-01)

Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
著者:: Huang, J, 等
出版事項: (2015)

Comparison of multiple imputation and other methods for the analysis of imputed genotypes
著者:: Paul L. Auer, 等
出版事項: (2023-06-01)

Evaluating Imputation Algorithms for Low-Depth Genotyping-By-Sequencing (GBS) Data.
著者:: Ariel W Chan, 等
出版事項: (2016-01-01)

Current software for genotype imputation
著者:: Ellinghaus David, 等
出版事項: (2009-07-01)

The SWine IMputation (SWIM) haplotype reference panel enables nucleotide resolution genetic mapping in pigs
著者:: Rongrong Ding, 等
出版事項: (2023-05-01)

The NBDC-DDBJ imputation server facilitates the use of controlled access reference panel datasets in Japan
著者:: Tsuyoshi Hachiya, 等
出版事項: (2022-12-01)

A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
著者:: Troy N. Rowan, 等
出版事項: (2019-12-01)