Tumour vessel structural analysis and Its application in image analysis
<p>Abnormal vascular structure has been identified as one of the major characteristics of tumours. In this thesis, we carry out quantitative analysis on different tumour vascular structures and research the relationship between vascular structure and its transportation efficiency.</p> &l...
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| Format: | Thesis |
| Language: | English |
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2010
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| _version_ | 1797091450324779008 |
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| author | Wang, P |
| author2 | Brady, M |
| author_facet | Brady, M Wang, P |
| author_sort | Wang, P |
| collection | OXFORD |
| description | <p>Abnormal vascular structure has been identified as one of the major characteristics of tumours. In this thesis, we carry out quantitative analysis on different tumour vascular structures and research the relationship between vascular structure and its transportation efficiency.</p> <p>We first study segmentation methods to extract the binary vessel representations from microscope images. We found that local phase-hysteresis thresholding is able to segment vessel objects from noisy microscope images. We also study methods to extract the centre lines of segmented vessel objects, a process termed as skeletonization. We modified the conventional thinning method to regularize the extremely asymmetrical structure found in the segmented vessel objects. We found this method is capable to produce vessel skeletons with satisfactory accuracy.</p> <p>We have developed a software for 3D vessel structural analysis. This software is consisted of four major parts: image segmentation, vessel skeletonization, skeleton modification and structure quantification. This software has implemented local phase-hysteresis thresholding and structure regularization-thinning methods. A GUI was introduced to enable users to alter the skeleton structures based on their subjective judgements. Radius and inter branch length quantification can be conducted based on the segmentation and skeletonization results. The accuracy of segmentation, skeletonization and quantification methods have been tested on several synthesized data sets.</p> <p>The change of tumour vascular structure after drug treatment was then investigated. We proposed metrics to quantify tumour vascular geometry and statistically analysed the effect of tested drugs on normalizing tumour vascular structure.</p> <p>finally, we developed a spatio-temporal model to simulate the delivery of oxygen and 3-18 F-fluoro-1-(2-nitro-1-imidazolyl)-2-propanol (Fmiso), which is the hypoxia tracer that gives out PET signal in an Fmiso PET scanning. This model is based on compartmental models, but also considers the spatial diffusion of oxygen and Fmiso. We validated our model on in vitro spheroid data and simulated the oxygen and Fmiso distribution on the segmented vessel images.</p> <p>We contend that the tumour Fmiso distribution (as observed in Fmiso PET imaging) is caused by the abnormal tumour vascular structure which is further aroused from tumour angiogenesis process. We depicted a modelling framework to research the relationships between tumour angiogenesis, vessel structure and Fmiso distribution, which is going to be the focus of our future work.</p> |
| first_indexed | 2024-03-07T03:33:15Z |
| format | Thesis |
| id | oxford-uuid:bb6c8bab-256a-45f7-b2a5-acf5ea28403d |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-07T03:33:15Z |
| publishDate | 2010 |
| record_format | dspace |
| spelling | oxford-uuid:bb6c8bab-256a-45f7-b2a5-acf5ea28403d2022-03-27T05:16:51ZTumour vessel structural analysis and Its application in image analysisThesishttp://purl.org/coar/resource_type/c_db06uuid:bb6c8bab-256a-45f7-b2a5-acf5ea28403dMathematical modeling (engineering)Image understandingInformation engineeringBiomedical engineeringEnglishOxford University Research Archive - Valet2010Wang, PBrady, MKelly, C<p>Abnormal vascular structure has been identified as one of the major characteristics of tumours. In this thesis, we carry out quantitative analysis on different tumour vascular structures and research the relationship between vascular structure and its transportation efficiency.</p> <p>We first study segmentation methods to extract the binary vessel representations from microscope images. We found that local phase-hysteresis thresholding is able to segment vessel objects from noisy microscope images. We also study methods to extract the centre lines of segmented vessel objects, a process termed as skeletonization. We modified the conventional thinning method to regularize the extremely asymmetrical structure found in the segmented vessel objects. We found this method is capable to produce vessel skeletons with satisfactory accuracy.</p> <p>We have developed a software for 3D vessel structural analysis. This software is consisted of four major parts: image segmentation, vessel skeletonization, skeleton modification and structure quantification. This software has implemented local phase-hysteresis thresholding and structure regularization-thinning methods. A GUI was introduced to enable users to alter the skeleton structures based on their subjective judgements. Radius and inter branch length quantification can be conducted based on the segmentation and skeletonization results. The accuracy of segmentation, skeletonization and quantification methods have been tested on several synthesized data sets.</p> <p>The change of tumour vascular structure after drug treatment was then investigated. We proposed metrics to quantify tumour vascular geometry and statistically analysed the effect of tested drugs on normalizing tumour vascular structure.</p> <p>finally, we developed a spatio-temporal model to simulate the delivery of oxygen and 3-18 F-fluoro-1-(2-nitro-1-imidazolyl)-2-propanol (Fmiso), which is the hypoxia tracer that gives out PET signal in an Fmiso PET scanning. This model is based on compartmental models, but also considers the spatial diffusion of oxygen and Fmiso. We validated our model on in vitro spheroid data and simulated the oxygen and Fmiso distribution on the segmented vessel images.</p> <p>We contend that the tumour Fmiso distribution (as observed in Fmiso PET imaging) is caused by the abnormal tumour vascular structure which is further aroused from tumour angiogenesis process. We depicted a modelling framework to research the relationships between tumour angiogenesis, vessel structure and Fmiso distribution, which is going to be the focus of our future work.</p> |
| spellingShingle | Mathematical modeling (engineering) Image understanding Information engineering Biomedical engineering Wang, P Tumour vessel structural analysis and Its application in image analysis |
| title | Tumour vessel structural analysis and Its application in image analysis |
| title_full | Tumour vessel structural analysis and Its application in image analysis |
| title_fullStr | Tumour vessel structural analysis and Its application in image analysis |
| title_full_unstemmed | Tumour vessel structural analysis and Its application in image analysis |
| title_short | Tumour vessel structural analysis and Its application in image analysis |
| title_sort | tumour vessel structural analysis and its application in image analysis |
| topic | Mathematical modeling (engineering) Image understanding Information engineering Biomedical engineering |
| work_keys_str_mv | AT wangp tumourvesselstructuralanalysisanditsapplicationinimageanalysis |