K-mer based prediction of Clostridioides difficile relatedness and ribotypes

K-mer based prediction of Clostridioides difficile relatedness and ribotypes

Comparative analysis of Clostridioides difficile whole-genome sequencing (WGS) data enables fine scaled investigation of transmission and is increasingly becoming part of routine surveillance. However, these analyses are constrained by the computational requirements of the large volumes of data invo...

Detaylı Bibliyografya
Asıl Yazarlar:	Moore, M, Wilcox, MH, Walker, AS, Eyre, D
Materyal Türü:	Journal article
Dil:	English
Baskı/Yayın Bilgisi:	Microbiology Society 2022

Benzer Materyaller

In vitro activity of eravacycline against common ribotypes of Clostridioides difficile
Yazar:: Bassères, E, ve diğerleri
Baskı/Yayın Bilgisi: (2020)

Regarding "Clostridium difficile ribotype does not predict severe infection".
Yazar:: Walker, A, ve diğerleri
Baskı/Yayın Bilgisi: (2013)

Human and Porcine Transmission of Clostridioides difficile Ribotype 078, Europe
Yazar:: Geraldine Moloney, ve diğerleri
Baskı/Yayın Bilgisi: (2021-09-01)

PCR ribotypes of Clostridioides difficile across Texas from 2011 to 2018 including emergence of ribotype 255
Yazar:: Anne J. Gonzales-Luna, ve diğerleri
Baskı/Yayın Bilgisi: (2020-01-01)

Diagnostic Methods of <i>Clostridioides difficile</i> Infection and <i>Clostridioides difficile</i> Ribotypes in Studied Sample
Yazar:: Elena Novakova, ve diğerleri
Baskı/Yayın Bilgisi: (2021-08-01)

Genetic Relatedness of 5-Year Isolates of <i>Clostridioides difficile</i> Polymerase Chain Reaction Ribotype 017 Strains in a Hospital
Yazar:: Jieun Kim, ve diğerleri
Baskı/Yayın Bilgisi: (2021-10-01)

Proteotyping of Clostridioides difficile as Alternate Typing Method to Ribotyping Is Able to Distinguish the Ribotypes RT027 and RT176 From Other Ribotypes
Yazar:: Matthias F. Emele, ve diğerleri
Baskı/Yayın Bilgisi: (2019-09-01)

Clostridioides difficile ribotype distribution in a large teaching hospital in Serbia
Yazar:: Miloš Korać, ve diğerleri
Baskı/Yayın Bilgisi: (2020-05-01)

Biological characteristics associated with virulence in Clostridioides difficile ribotype 002 in Hong Kong
Yazar:: Ka Yi Kong, ve diğerleri
Baskı/Yayın Bilgisi: (2020-01-01)

Epidemic ribotypes of Clostridium (now Clostridioides) difficile are likely to be more virulent than non-epidemic ribotypes in animal models
Yazar:: John C. Vitucci, ve diğerleri
Baskı/Yayın Bilgisi: (2020-02-01)

The emergence of Clostridioides difficile PCR ribotype 127 at a hospital in northeastern Taiwan
Yazar:: Bo-Yang Tsai, ve diğerleri
Baskı/Yayın Bilgisi: (2022-10-01)

Quantification of Clostridioides (Clostridium) difficile in feces of calves of different age and determination of predominant Clostridioides difficile ribotype 033 relatedness and transmission between family dairy farms using multilocus variable-number tandem-repeat analysis
Yazar:: Petra Bandelj, ve diğerleri
Baskı/Yayın Bilgisi: (2018-10-01)

Distribution of Clostridioides difficile ribotypes and sequence types across humans, animals and food in 13 European countries
Yazar:: Maja Rupnik, ve diğerleri
Baskı/Yayın Bilgisi: (2024-12-01)

Impact of CodY protein on metabolism, sporulation and virulence in Clostridioides difficile ribotype 027.
Yazar:: Nadine Daou, ve diğerleri
Baskı/Yayın Bilgisi: (2019-01-01)

High Prevalence of <i>Clostridioides difficile</i> Ribotype 176 in the University Hospital in Kosice
Yazar:: Katarina Curova, ve diğerleri
Baskı/Yayın Bilgisi: (2023-03-01)

Phylogenomic analysis of Clostridioides difficile ribotype 106 strains reveals novel genetic islands and emergent phenotypes
Yazar:: Bryan Angelo P. Roxas, ve diğerleri
Baskı/Yayın Bilgisi: (2020-12-01)

Use of tcdC gene sequencing to prevent misidentification of Clostridioides difficile ribotype 176 and 027
Yazar:: Tatiana Havrilova, ve diğerleri
Baskı/Yayın Bilgisi: (2024-09-01)

Clostridioides difficile in Foods with Animal Origins; Prevalence, Toxigenic Genes, Ribotyping Profile, and Antimicrobial Resistance
Yazar:: Hadi Bacheno, ve diğerleri
Baskı/Yayın Bilgisi: (2022-01-01)

Characterization of Food Chain <i>Clostridioides difficile</i> Isolates in Terms of Ribotype and Antimicrobial Resistance
Yazar:: Pilar Marcos, ve diğerleri
Baskı/Yayın Bilgisi: (2023-05-01)

Characterization of a Clostridioides difficile outbreak caused by PCR ribotype 046, associated with increased mortality
Yazar:: Cecilia Magnusson, ve diğerleri
Baskı/Yayın Bilgisi: (2022-12-01)

A Case Report and Review of the Literature: Reactive Arthritis Caused by Clostridioides difficile ribotype 027
Yazar:: Ortrud Zimmermann, ve diğerleri
Baskı/Yayın Bilgisi: (2022-02-01)

Usefulness of Capillary Gel Electrophoresis-Based PCR for Detection of <i>Clostridioides difficile</i> Strains with Hypervirulent Ribotypes
Yazar:: Tomasz Bogiel, ve diğerleri
Baskı/Yayın Bilgisi: (2024-05-01)

Risk Factors of Severe Clostridioides difficile Infection; Sequential Organ Failure Assessment Score, Antibiotics, and Ribotypes
Yazar:: Min Hyuk Choi, ve diğerleri
Baskı/Yayın Bilgisi: (2022-05-01)

Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans.
Yazar:: Anders Werner, ve diğerleri
Baskı/Yayın Bilgisi: (2020-01-01)

Hypervirulent clade 2, ribotype 019/sequence type 67 Clostridioides difficile strain from Japan
Yazar:: Ryoichi Saito, ve diğerleri
Baskı/Yayın Bilgisi: (2019-11-01)

The Effect of Selected Bee Products on Adhesion and Biofilm of <i>Clostridioides difficile</i> Strains Belonging to Different Ribotypes
Yazar:: Dorota Wultańska, ve diğerleri
Baskı/Yayın Bilgisi: (2022-10-01)

Community-acquired fulminant Clostridioides (Clostridium) difficile infection by ribotype 027 isolate in Japan: a case report
Yazar:: Masayuki Hiraki, ve diğerleri
Baskı/Yayın Bilgisi: (2021-06-01)

Ribotype Classification of Clostridioides difficile Isolates Is Not Predictive of the Amino Acid Sequence Diversity of the Toxin Virulence Factors TcdA and TcdB
Yazar:: Zhenghui Li, ve diğerleri
Baskı/Yayın Bilgisi: (2020-06-01)

Ribotypes and antimicrobial susceptibility profiles of clinical Clostridioides difficile isolates: A multicenter, laboratory-based surveillance in Taiwan, 2019–2021
Yazar:: Chin-Shiang Tsai, ve diğerleri
Baskı/Yayın Bilgisi: (2024-04-01)

Short-term genome stability of serial Clostridium difficile ribotype 027 isolates in an experimental gut model and recurrent human disease
Yazar:: Eyre, D, ve diğerleri
Baskı/Yayın Bilgisi: (2013)

A role for tetracycline selection in recent evolution of agriculture-associated Clostridium difficile PCR ribotype 078
Yazar:: Dingle, K, ve diğerleri
Baskı/Yayın Bilgisi: (2019)

Epidemic Clostridium difficile Ribotype 027 in Chile
Yazar:: Cristian Hernández-Rocha, ve diğerleri
Baskı/Yayın Bilgisi: (2012-08-01)

Whole Genome Sequencing Evidences High Rates of Relapse in <i>Clostridioides difficile</i> Infection Caused by the Epidemic Ribotype 106
Yazar:: Loreto Suárez-Bode, ve diğerleri
Baskı/Yayın Bilgisi: (2023-01-01)

Clostridium difficile ribotypes in humans and animals in Brazil
Yazar:: Rodrigo Otávio Silveira Silva, ve diğerleri
Baskı/Yayın Bilgisi: (2015-12-01)

Clostridium difficile PCR Ribotypes in Calves, Canada
Yazar:: Alexander Rodriguez-Palacios, ve diğerleri
Baskı/Yayın Bilgisi: (2006-11-01)

Rapid Classification of <i>Clostridioides difficile</i> Strains Using MALDI-TOF MS Peak-Based Assay in Comparison with PCR-Ribotyping
Yazar:: Adriana Calderaro, ve diğerleri
Baskı/Yayın Bilgisi: (2021-03-01)

Retrospective Definition of <i>Clostridioides difficile</i> PCR Ribotypes on the Basis of Whole Genome Polymorphisms: A Proof of Principle Study
Yazar:: Manisha Goyal, ve diğerleri
Baskı/Yayın Bilgisi: (2020-12-01)

The Effect of Subinhibitory Concentration of Metronidazole on the Growth and Biofilm Formation on Toxigenic <i>Clostridioides difficile</i> Strains Belonging to Different Ribotypes
Yazar:: Dorota Wultańska, ve diğerleri
Baskı/Yayın Bilgisi: (2023-10-01)

Pleiotropic effects of Mentha longifolia L. extract on the regulation of genes involved in inflammation and apoptosis induced by Clostridioides difficile ribotype 001
Yazar:: Hamideh Raeisi, ve diğerleri
Baskı/Yayın Bilgisi: (2023-10-01)

Clostridioides difficile ribotypes 001 and 126 were predominant in Tehran healthcare settings from 2004 to 2018: a 14-year-long cross-sectional study
Yazar:: Masoumeh Azimirad, ve diğerleri
Baskı/Yayın Bilgisi: (2020-01-01)