DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments

DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments

Veure altres versions (1)

The rapidly growing availability of genome information has created considerable demand for both fast and accurate phylogenetic inference algorithms. We present a novel method called DendroBLAST for reconstructing phylogenetic dendrograms/trees from protein sequences using BLAST. This method differs...

Descripció completa

Dades bibliogràfiques
Autors principals:	Kelly, S, Maini, P
Format:	Journal article
Idioma:	English
Publicat:	Public Library of Science 2013

Ítems similars

DendroBlast: approximate phylogenetic trees in the absence of multiple sequence alignments
per: Kelly, S, et al.
Publicat: (2013)

An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
per: Lunter, G, et al.
Publicat: (2003)

MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments.
per: Collingridge, P, et al.
Publicat: (2012)

BlastAlign: a program that uses blast to align problematic nucleotide sequences.
per: Belshaw, R, et al.
Publicat: (2005)

Phylogenetic automata, pruning, and multiple alignment
per: Westesson, O, et al.
Publicat: (2011)

DendroX: multi-level multi-cluster selection in dendrograms
per: Feiling Feng, et al.
Publicat: (2024-02-01)

Distribution of autochthonous dendro-species in the Management Unit „Ozren“-Petrovo – implementation of GIS technology
per: Đorđije Milanović, et al.
Publicat: (2010-12-01)

Distribution of autochthonous dendro-species in the Management Unit „Ozren“-Petrovo – implementation of GIS technology
per: Đorđije Milanović, et al.
Publicat: (2010-12-01)

Distribution of autochthonous dendro-species in the Management Unit „Ozren“-Petrovo – implementation of GIS technology
per: Đorđije Milanović, et al.
Publicat: (2010-12-01)

How can Sequence Alignment Method Affect the Phylogenetic Relationship Results?
per: Hossam F. Abou-Shaara
Publicat: (2023-09-01)

Strategies for Multiple Sequence Alignment
per: Hugh B. Nicholas, et al.
Publicat: (2002-03-01)

Research into Dendro-Acoustic Properties of Intro-duced Clones’ Wood as Material for Manufacturing Musical Instruments
per: Vladimir Ilyich Fedyukov, et al.
Publicat: (2019-01-01)

Alignment-Free Phylogenetic Reconstruction
per: Daskalakis, Constantinos, et al.
Publicat: (2012)

Three-Way Alignment Improves Multiple Sequence Alignment of Highly Diverged Sequences
per: Mahbubeh Askari Rad, et al.
Publicat: (2024-05-01)

Web-based interface facilitating sequence-to-structure analysis of BLAST alignment reports
per: Natarajan Ganesan, et al.
Publicat: (2005-08-01)

Analyses exploratoires dendrochronologique et dendro-isotopique des ripisylves de la rivière Milo (Guinée)
per: Soumaïla Condé, et al.
Publicat: (2020-10-01)

Multiple alignment-free sequence comparison.
per: Ren, J, et al.
Publicat: (2013)

Multiple Sequence Alignment Tools on the Web
per: Giles J. Gaskell
Publicat: (2000-07-01)

Estimating biomass sources for a 10 MW dendro power plant using Leucaena leucocephala fuel wood
per: Muhamad, Mohd Izhwan, et al.
Publicat: (2023)

Operads and phylogenetic trees
per: Baez, JC, et al.
Publicat: (2017)

Multiple correlation sequences not approximable by nilsequences
per: Briet, J, et al.
Publicat: (2021)

An algorithm for statistical alignment of sequences related by a binary tree.
per: Hein, J
Publicat: (2001)

Multiple sequence analysis in the presence of alignment uncertainty
per: Herman, J, et al.
Publicat: (2014)

An improved scoring matrix for multiple sequence alignment
per: Shu, Jian-Jun, et al.
Publicat: (2014)

Statistics for Bioinformatics : Methods for Multiple Sequence Alignment /
per: Julie, Thompson
Publicat: (2016)

ESPript: analysis of multiple sequence alignments in PostScript.
per: Gouet, P, et al.
Publicat: (1999)

Inferring tumour proliferative organisation from phylogenetic tree measures in a computational model
per: Maini, P, et al.
Publicat: (2019)

Reticular alignment: a progressive corner-cutting method for multiple sequence alignment.
per: Szabó, A, et al.
Publicat: (2010)

Reconstruction of phyletic trees by global alignment of multiple metabolic networks
per: Ma, Cheng-Yu, et al.
Publicat: (2013)

Phylogenetics—A Web of Trees
per: Tim Littlejohn
Publicat: (2000-09-01)

Approximate statistics of gapped alignments.
per: Mott, R, et al.
Publicat: (1999)

An Enhanced Flower Pollination Algorithm For Multiple Sequence Alignment
per: Hussein, Ahmad Moh’d Aziz Issa
Publicat: (2020)

Comparison and evaluation of multiple sequence alignment tools in bininformatics
per: Sedaghatinia, Asieh, et al.
Publicat: (2009)

Accelerating Multiple Sequence Alignments Using Parallel Computing
per: Qanita Bani Baker, et al.
Publicat: (2024-02-01)

MULTIPLE SEQUENCE ALIGNMENT MENGGUNAKAN HIDDEN MARKOV MODEL
per: , Afiahayati , Sri Mulyana
Publicat: (2008)

Optimising linear taxon sequences derived from phylogenetic trees - Reply to Haston and al.
per: Hawthorne, W, et al.
Publicat: (2008)

PhyIN: trimming alignments by phylogenetic incompatibilities among neighbouring sites
per: Wayne P. Maddison
Publicat: (2024-12-01)

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
per: Satija, R, et al.
Publicat: (2009)

Pareto-optimal phylogenetic tree reconciliation
per: Libeskind-Hadas, Ran, et al.
Publicat: (2015)

Phylogenetic trees and the future of mammalian biodiversity
per: Grenyer, R
Publicat: (2008)