Processing single-cell RNA-seq datasets using SingCellaR

Processing single-cell RNA-seq datasets using SingCellaR

Single-cell RNA sequencing has led to unprecedented levels of data complexity. Although several computational platforms are available, performing data analyses for multiple datasets remains a significant challenge. Here, we provide a comprehensive analytical protocol to interrogate multiple datasets...

書目詳細資料
Main Authors:	Wang, G, Wen, WX, Mead, AJ, Roy, A, Psaila, B, Thongjuea, S
格式:	Journal article
語言:	English
出版:	Cell Press 2022

相似書籍

Processing single-cell RNA-seq datasets using SingCellaR
由: Guanlin Wang, et al.
出版: (2022-06-01)

Technological advances and computational approaches for alternative splicing analysis in single cells
由: Wen, WX, et al.
出版: (2020)

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution
由: Wen, WX, et al.
出版: (2020)

Doralice Maria Cella (1954-2013)
由: Marielle Cristina Schneider
出版: (2013-01-01)

Joux (Rhône). La mine de Cella
由: Gérald Bonnamour, et al.
出版: (2016-12-01)

Joux (Rhône). La mine de Cella
由: Gérald Bonnamour
出版: (2017-12-01)

Performance of CellaVision DM96 in leukocyte classification
由: Lik Hang Lee, et al.
出版: (2013-01-01)

RNA2HLA: HLA-based quality control of RNA-seq datasets
由: Chelysheva, I, et al.
出版: (2021)

Accuracy of the CellaVision DM96 platform for reticulocyte counting
由: Etienne R. Mahe, et al.
出版: (2014-01-01)

Integrated analysis of single‐cell RNA‐seq dataset and bulk RNA‐seq dataset constructs a prognostic model for predicting survival in human glioblastoma
由: Wenwen Lai, et al.
出版: (2022-05-01)

Application of single-cell approaches to study myeloproliferative neoplasm biology
由: Royston, D, et al.
出版: (2021)

Platelet count estimation using the CellaVision DM96 system
由: Yuon Gao, et al.
出版: (2013-01-01)

TARGET-Seq: a protocol for high-sensitivity single-cell mutational analysis and parallel RNA sequencing
由: Rodriguez-Meira, A, et al.
出版: (2020)

Consequences and opportunities arising due to sparser single-cell RNA-seq datasets
由: Gerard A. Bouland, et al.
出版: (2023-04-01)

Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets
由: Alaina Mahalanabis, et al.
出版: (2022-01-01)

Single-cell methods in myeloproliferative neoplasms: old questions, new technologies
由: O'Sullivan, JM, et al.
出版: (2023)

Discovery of protein-lncRNA interactions by integrating large-scale CLIP-Seq and RNA-Seq datasets
由: Jun-Hao eLi, et al.
出版: (2015-01-01)

Response to Cella et al, May 2006--supplement 1 Medical Care.
由: Valderas, J, et al.
出版: (2007)

Correlation of Sysmex-XN9000 and CellaVision Advanced RBC software on anisocytosis
由: Jing Jing, et al.
出版: (2023-12-01)

La Cella (Salou, Tarragona). Un puerto comercial en el litoral cessetano
由: Jordi Diloli Fons, et al.
出版: (2016-12-01)

RNA splicing analysis using heterogeneous and large RNA-seq datasets
由: Jorge Vaquero-Garcia, et al.
出版: (2023-03-01)

A single-cell RNA-seq dataset describing macrophages in NSCLC tumor and peritumor tissues
由: Aitian Li, et al.
出版: (2024-10-01)

Common mitochondrial deletions in RNA-Seq: evaluation of bulk, single-cell, and spatial transcriptomic datasets
由: Audrey A. Omidsalar, et al.
出版: (2024-02-01)

Avoiding false discoveries in single-cell RNA-seq by revisiting the first Alzheimer’s disease dataset
由: Alan E Murphy, et al.
出版: (2023-12-01)

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure
由: John A. Hadish, et al.
出版: (2022-05-01)

Performance of the CellaVision ® DM96 system for detecting red blood cell morphologic abnormalities
由: Christopher L Horn, et al.
出版: (2015-01-01)

Persone finte Paradossi dell'individualismo e soggetti collettivi di Gian Primo Cella
由: Pietro Causarano
出版: (2016-10-01)

Single-cell approaches reveal novel cellular pathways for megakaryocyte and erythroid differentiation
由: Psaila, B, et al.
出版: (2019)

Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads
由: Christina Homberger, et al.
出版: (2023-04-01)

Annotated-VocalSet: A Singing Voice Dataset
由: Behnam Faghih, et al.
出版: (2022-09-01)

Beyond benchmarking and towards predictive models of dataset-specific single-cell RNA-seq pipeline performance
由: Cindy Fang, et al.
出版: (2024-06-01)

BATMAN: Fast and Accurate Integration of Single-Cell RNA-Seq Datasets via Minimum-Weight Matching
由: Igor Mandric, et al.
出版: (2020-06-01)

SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
由: Tao Peng, et al.
出版: (2019-05-01)

Technological advances and computational approaches for alternative splicing analysis in single cells
由: Wei Xiong Wen, et al.
出版: (2020-01-01)

Evaluation of the accuracy of the CellaVision™ DM96 in a high HIV-prevalence population in South Africa
由: Jenifer L. Vaughan, et al.
出版: (2016-03-01)

Unravelling intratumoral heterogeneity through high-sensitivity single-cell mutational analysis and parallel RNA sequencing
由: Rodriguez-Meira, A, et al.
出版: (2019)

VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution.
由: Wei Xiong Wen, et al.
出版: (2020-09-01)

Massively parallel single-nucleus RNA-seq with DroNc-seq
由: Avraham-Davidi, Inbal, et al.
出版: (2018)

CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification
由: Tamar Hashimshony, et al.
出版: (2012-09-01)

Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data
由: Qianhui Huang, et al.
出版: (2021-04-01)