Combining co-evolution and secondary structure prediction to improve fragment library generation

Combining co-evolution and secondary structure prediction to improve fragment library generation

<strong>Motivation</strong> Recent advances in co-evolution techniques have made possible the accurate prediction of protein structures in the absence of a template. Here, we provide a general approach that further utilizes co-evolution constraints to generate better fragment libraries f...

पूर्ण विवरण

ग्रंथसूची विवरण
मुख्य लेखकों:	de Oliveira, S, Deane, C
स्वरूप:	Journal article
भाषा:	English
प्रकाशित:	Oxford University Press 2018

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प्रकाशित: (2010)

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द्वारा: Burke, D, और अन्य
प्रकाशित: (2000)

Biologically inspired de novo protein structure prediction
द्वारा: de Oliveira, S, और अन्य
प्रकाशित: (2015)

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Predicting protein-protein interactions in the context of protein evolution.
द्वारा: Lewis, A, और अन्य
प्रकाशित: (2010)

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द्वारा: Tsai, June Wah.
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