Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomic

Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomic

Raw image file of scanned tissue sections acquired using Vectra Polaris imaging system. Scanned sections represent FFPE kidney sections from TLR7 agonist imiquimod treated mouse (IMQ) and matching controls (Ctrl), which are defined in the file labels

Bibliografiske detaljer
Main Authors:	Bhandari, A, Bull, K
Format:	Dataset
Sprog:	English
Udgivet:	University of Oxford 2024

Lignende værker

Multiscale topology classifies cells in subcellular spatial transcriptomics
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Udgivet: (2024)

Bento: a toolkit for subcellular analysis of spatial transcriptomics data
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Comprehensive subcellular topologies of polypeptides in Streptomyces
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Spatial topology of organelle is a new breast cancer cell classifier
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Subcellular spatial transcriptomics identifies three mechanistically different classes of localizing RNAs
af: Lucia Cassella, et al.
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Spatial subcellular organelle networks in single cells
af: Mythreye Venkatesan, et al.
Udgivet: (2023-04-01)

Improved multi-label classifiers for predicting protein subcellular localization
af: Lei Chen, et al.
Udgivet: (2024-01-01)

BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data
af: Xiaohang Fu, et al.
Udgivet: (2024-01-01)

Single-cell RNA-sequencing and subcellular spatial transcriptomics facilitate the translation of liver microphysiological systems for regulatory application
af: Dan Li, et al.
Udgivet: (2023-07-01)

Cell-free DNA topology depends on its subcellular and cellular origins in cancer
af: Ethan Z. Malkin, et al.
Udgivet: (2022-10-01)

Ensemble of Multiple Classifiers for Multilabel Classification of Plant Protein Subcellular Localization
af: Warin Wattanapornprom, et al.
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A multiscale and multiperspective quantifying framework for spatial patterns and influencing mechanisms of geographical indications
af: Fulin Liu, et al.
Udgivet: (2024-08-01)

Structural determinants of PINK1 topology and dual subcellular distribution
af: Kang Un, et al.
Udgivet: (2010-11-01)

Spatial omics technologies at multimodal and single cell/subcellular level
af: Jiwoon Park, et al.
Udgivet: (2022-12-01)

MERR APEX-seq protocol for profiling the subcellular nascent transcriptome in mammalian cells
af: Ran Li, et al.
Udgivet: (2023-03-01)

MNMST: topology of cell networks leverages identification of spatial domains from spatial transcriptomics data
af: Yu Wang, et al.
Udgivet: (2024-05-01)

Integrating single-cell and spatial transcriptomics in a computational multiscale model of triple negative breast cancer
af: Victori, P
Udgivet: (2022)

An improved procedure for subcellular spatial alignment during live-cell CLEM.
af: Benjamin S Padman, et al.
Udgivet: (2014-01-01)

Transcriptome-wide organization of subcellular microenvironments revealed by ATLAS-Seq
af: Adekunle, Danielle(Danielle Aduke)
Udgivet: (2021)

Using deep learning to quantify neuronal activation from single-cell and spatial transcriptomic data
af: Ethan Bahl, et al.
Udgivet: (2024-01-01)

Time-Delay Identification Using Multiscale Ordinal Quantifiers
af: Miguel C. Soriano, et al.
Udgivet: (2021-07-01)

Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains
af: Eils Roland, et al.
Udgivet: (2006-06-01)

Subcellular RNA-seq for the Analysis of the Dendritic and Somatic Transcriptomes of Single Neurons
af: Julio Perez, et al.
Udgivet: (2022-01-01)

Subcellular sequencing of single neurons reveals the dendritic transcriptome of GABAergic interneurons
af: Julio D Perez, et al.
Udgivet: (2021-01-01)

Classifying divisor topologies for string phenomenology
af: Pramod Shukla
Udgivet: (2022-12-01)

Classifying and quantifying changes in papilloedema using machine learning
af: Mark J Kupersmith, et al.
Udgivet: (2024-05-01)

A Spatially Guided Machine-Learning Method to Classify and Quantify Glomerular Patterns of Injury in Histology Images
af: Justinas Besusparis, et al.
Udgivet: (2023-10-01)

Exploring VAE-driven implicit parametric unit cells for multiscale topology optimization
af: Chenchen Chu, et al.
Udgivet: (2024-08-01)

scClassify: sample size estimation and multiscale classification of cells using single and multiple reference
af: Yingxin Lin, et al.
Udgivet: (2020-06-01)

Multiscale topology characterises dynamic tumour vascular networks
af: Stolz-Pretzer, B, et al.
Udgivet: (2022)

Concurrent multiscale topology optimization: A hybrid approach
af: Minh Ngoc Nguyen, et al.
Udgivet: (2022-09-01)

Spatially resolved mapping of proteome turnover dynamics with subcellular precision
af: Feng Yuan, et al.
Udgivet: (2023-11-01)

Multiplexed protein profiling reveals spatial subcellular signaling networks
af: Shuangyi Cai, et al.
Udgivet: (2022-09-01)

Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution
af: Ana Martinez-Val, et al.
Udgivet: (2021-12-01)

Hypoxia classifier for transcriptome datasets
af: Laura Puente-Santamaría, et al.
Udgivet: (2022-05-01)

Joint cell segmentation and cell type annotation for spatial transcriptomics
af: Russell Littman, et al.
Udgivet: (2021-05-01)

Multiscale mapping of transcriptomic signatures for cardiotoxic drugs
af: Jens Hansen, et al.
Udgivet: (2024-09-01)

Nanodynamo quantifies subcellular RNA dynamics revealing extensive coupling between steps of the RNA life cycle
af: Lucia Coscujuela Tarrero, et al.
Udgivet: (2024-09-01)

Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE
af: Oliver M. Crook, et al.
Udgivet: (2022-10-01)

Applications of learning classifier systems /
af: Bull, Larry
Udgivet: (2004)