New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.

New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.

A sequence element located immediately upstream of the TATA element, and having the consensus sequence 5'-G/C-G/C-G/A-C-G-C-C-3', affects the ability of transcription factor IIB to enter transcription complexes and support transcription initiation. The sequence element is recognized direct...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Lagrange, T, Kapanidis, A, Tang, H, Reinberg, D, Ebright, R
Fformat:	Journal article
Iaith:	English
Cyhoeddwyd:	1998

Eitemau Tebyg

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism.
gan: Kapanidis, A, et al.
Cyhoeddwyd: (2006)

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.
gan: Mukhopadhyay, J, et al.
Cyhoeddwyd: (2001)

RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding
gan: Mazumder, A, et al.
Cyhoeddwyd: (2021)

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: Implications for transcription start-site selection
gan: Robb, N, et al.
Cyhoeddwyd: (2013)

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection.
gan: Robb, N, et al.
Cyhoeddwyd: (2013)

Transcription initiation at a consensus bacterial promoter proceeds via a 'bind-unwind-load-and-lock' mechanism
gan: Mazumder, A, et al.
Cyhoeddwyd: (2021)

Closing and opening of the RNA polymerase trigger loop
gan: Mazumder, A, et al.
Cyhoeddwyd: (2020)

Pause sequences facilitate entry into long-lived paused states by reducing RNA polymerase transcription rates
gan: Ronen Gabizon, et al.
Cyhoeddwyd: (2018-07-01)

RNA polymerase pausing during initial transcription
gan: Duchi, D, et al.
Cyhoeddwyd: (2016)

Transcription initiation at a consensus bacterial promoter proceeds via a ‘bind-unwind-load-and-lock’ mechanism
gan: Abhishek Mazumder, et al.
Cyhoeddwyd: (2021-10-01)

Phosphorylation controls RNA binding and transcription by the influenza virus polymerase.
gan: Anthony R Dawson, et al.
Cyhoeddwyd: (2020-09-01)

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex.
gan: Mekler, V, et al.
Cyhoeddwyd: (2002)

Rho-dependent transcription termination in bacteria recycles RNA polymerases stalled at DNA lesions
gan: Sriyans Jain, et al.
Cyhoeddwyd: (2019-03-01)

Real-time transcription initiation by E. coli RNA polymerase in vitro and in vivo
gan: Plochowietz, A, et al.
Cyhoeddwyd: (2015)

AT-rich sequence elements promote nascent transcript cleavage leading to RNA polymerase II termination.
gan: White, E, et al.
Cyhoeddwyd: (2013)

Cooperative RNA polymerase molecules behavior on a stochastic sequence-dependent model for transcription elongation.
gan: Pedro Rafael Costa, et al.
Cyhoeddwyd: (2013-01-01)

Sensitivity of mitochondrial transcription and resistance of RNA polymerase II dependent nuclear transcription to antiviral ribonucleosides.
gan: Jamie J Arnold, et al.
Cyhoeddwyd: (2012-01-01)

Three-dimensional strictures of RNA polymerase holoenzyme and the RNA polymerase-promoter open complex: Systematic fluorescence resonance energy transfer and distance-constrained docking
gan: Mekler, V, et al.
Cyhoeddwyd: (2002)

Transcriptional bursting is intrinsically caused by interplay between RNA polymerases on DNA
gan: Keisuke Fujita, et al.
Cyhoeddwyd: (2016-12-01)

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.
gan: Mukhopadhyay, J, et al.
Cyhoeddwyd: (2003)

Transcription termination by RNA Polymerase II
gan: White, E
Cyhoeddwyd: (2012)

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
gan: Cho, Won-ki, et al.
Cyhoeddwyd: (2020)

TRE5-A retrotransposition profiling reveals putative RNA polymerase III transcription complex binding sites on the Dictyostelium extrachromosomal rDNA element.
gan: Thomas Spaller, et al.
Cyhoeddwyd: (2017-01-01)

Role of the RNA/DNA kinase Grc3 in transcription termination by RNA polymerase I.
gan: Braglia, P, et al.
Cyhoeddwyd: (2010)

Transcription reinitiation by recycling RNA polymerase that diffuses on DNA after releasing terminated RNA
gan: Kang, W, et al.
Cyhoeddwyd: (2020)

Transcription by an immobilized RNA polymerase from bacteriophage T7 and the topology of transcription.
gan: Cook, P, et al.
Cyhoeddwyd: (1992)

Development of a method for evaluating the mRNA transcription activity of influenza virus RNA-dependent RNA polymerase through real-time reverse transcription polymerase chain reaction
gan: Yuka Horio, et al.
Cyhoeddwyd: (2021-08-01)

Fixing the model for transcription: the DNA moves, not the polymerase.
gan: Papantonis, A, et al.
Cyhoeddwyd: (2011)

Structural transitions in transcription initiation: Kinetic and single molecule kinetic analyses
gan: Mukhopadhyay, J, et al.
Cyhoeddwyd: (2001)

Characterizing intergenic transcription at RNA polymerase II binding sites in normal and cancer tissues
gan: Pierre de Langen, et al.
Cyhoeddwyd: (2023-10-01)

Extragenic accumulation of RNA polymerase II enhances transcription by RNA polymerase III.
gan: Imke Listerman, et al.
Cyhoeddwyd: (2007-11-01)

Role of R-loops in pause-dependent transcriptional termination of RNA polymerase II
gan: Skourti-Stathaki, K
Cyhoeddwyd: (2012)

CDK9-dependent RNA polymerase II pausing controls transcription initiation
gan: Saskia Gressel, et al.
Cyhoeddwyd: (2017-10-01)

Non-programmed transcriptional frameshifting is common and highly RNA polymerase type-dependent
gan: Dawid Koscielniak, et al.
Cyhoeddwyd: (2018-11-01)

Exon tethering in transcription by RNA polymerase II.
gan: Dye, M, et al.
Cyhoeddwyd: (2006)

Alternative transcription cycle for bacterial RNA polymerase
gan: Harden, Timothy T, et al.
Cyhoeddwyd: (2021)

Alternative transcription cycle for bacterial RNA polymerase
gan: Timothy T. Harden, et al.
Cyhoeddwyd: (2020-01-01)

The conserved protein Seb1 drives transcription termination by binding RNA polymerase II and nascent RNA
gan: Wittmann, S, et al.
Cyhoeddwyd: (2017)

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.
gan: Kapanidis, A, et al.
Cyhoeddwyd: (2005)

Mapping DNA sequence to transcription factor binding energy in vivo.
gan: Stephanie L Barnes, et al.
Cyhoeddwyd: (2019-02-01)