ELIXIR biovalidator for semantic validation of life science metadata
To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Journal article |
| Language: | English |
| Published: |
Oxford University Press
2022
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| _version_ | 1811140389639290880 |
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| author | Liyanage, I Burdett, T Droesbeke, B Erdos, K Fernandez, R Gray, A Haseeb, M Penim, F Pommier, C Rocca-Serra, P Courtot, M Coppens, F |
| author_facet | Liyanage, I Burdett, T Droesbeke, B Erdos, K Fernandez, R Gray, A Haseeb, M Penim, F Pommier, C Rocca-Serra, P Courtot, M Coppens, F |
| author_sort | Liyanage, I |
| collection | OXFORD |
| description | To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents. Source code: https://github.com/elixir-europe/biovalidator, Release: v1.9.1, License: Apache License 2.0, Deployed at: https://www.ebi.ac.uk/biosamples/schema/validator/validate. |
| first_indexed | 2024-03-07T07:15:56Z |
| format | Journal article |
| id | oxford-uuid:d65ba131-b161-4033-8328-d67edf86c9f4 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-09-25T04:21:12Z |
| publishDate | 2022 |
| publisher | Oxford University Press |
| record_format | dspace |
| spelling | oxford-uuid:d65ba131-b161-4033-8328-d67edf86c9f42024-08-06T11:19:20ZELIXIR biovalidator for semantic validation of life science metadataJournal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:d65ba131-b161-4033-8328-d67edf86c9f4EnglishSymplectic ElementsOxford University Press2022Liyanage, IBurdett, TDroesbeke, BErdos, KFernandez, RGray, AHaseeb, MPenim, FPommier, CRocca-Serra, PCourtot, MCoppens, FTo advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents. Source code: https://github.com/elixir-europe/biovalidator, Release: v1.9.1, License: Apache License 2.0, Deployed at: https://www.ebi.ac.uk/biosamples/schema/validator/validate. |
| spellingShingle | Liyanage, I Burdett, T Droesbeke, B Erdos, K Fernandez, R Gray, A Haseeb, M Penim, F Pommier, C Rocca-Serra, P Courtot, M Coppens, F ELIXIR biovalidator for semantic validation of life science metadata |
| title | ELIXIR biovalidator for semantic validation of life science metadata |
| title_full | ELIXIR biovalidator for semantic validation of life science metadata |
| title_fullStr | ELIXIR biovalidator for semantic validation of life science metadata |
| title_full_unstemmed | ELIXIR biovalidator for semantic validation of life science metadata |
| title_short | ELIXIR biovalidator for semantic validation of life science metadata |
| title_sort | elixir biovalidator for semantic validation of life science metadata |
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