ESPript: analysis of multiple sequence alignments in PostScript.
MOTIVATION: The program ESPript (Easy Sequencing in PostScript) allows the rapid visualization, via PostScript output, of sequences aligned with popular programs such as CLUSTAL-W or GCG PILEUP. It can read secondary structure files (such as that created by the program DSSP) to produce a synthesis o...
| Main Authors: | , , , |
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| Format: | Journal article |
| Language: | English |
| Published: |
1999
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| _version_ | 1797098968968069120 |
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| author | Gouet, P Courcelle, E Stuart, D Métoz, F |
| author_facet | Gouet, P Courcelle, E Stuart, D Métoz, F |
| author_sort | Gouet, P |
| collection | OXFORD |
| description | MOTIVATION: The program ESPript (Easy Sequencing in PostScript) allows the rapid visualization, via PostScript output, of sequences aligned with popular programs such as CLUSTAL-W or GCG PILEUP. It can read secondary structure files (such as that created by the program DSSP) to produce a synthesis of both sequence and structural information. RESULTS: ESPript can be run via a command file or a friendly html-based user interface. The program calculates an homology score by columns of residues and can sort this calculation by groups of sequences. It offers a palette of markers to highlight important regions in the alignment. ESPript can also paste information on residue conservation into coordinate files, for subsequent visualization with a graphics program. AVAILABILITY: ESPript can be accessed on its Web site at http://www.ipbs.fr/ESPript. Sources and helpfiles can be downloaded via anonymous ftp from ftp.ipbs.fr. A tar file is held in the directory pub/ESPript. |
| first_indexed | 2024-03-07T05:17:07Z |
| format | Journal article |
| id | oxford-uuid:dd988267-ff55-4788-9a7b-f04305321321 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-07T05:17:07Z |
| publishDate | 1999 |
| record_format | dspace |
| spelling | oxford-uuid:dd988267-ff55-4788-9a7b-f043053213212022-03-27T09:26:09ZESPript: analysis of multiple sequence alignments in PostScript.Journal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:dd988267-ff55-4788-9a7b-f04305321321EnglishSymplectic Elements at Oxford1999Gouet, PCourcelle, EStuart, DMétoz, FMOTIVATION: The program ESPript (Easy Sequencing in PostScript) allows the rapid visualization, via PostScript output, of sequences aligned with popular programs such as CLUSTAL-W or GCG PILEUP. It can read secondary structure files (such as that created by the program DSSP) to produce a synthesis of both sequence and structural information. RESULTS: ESPript can be run via a command file or a friendly html-based user interface. The program calculates an homology score by columns of residues and can sort this calculation by groups of sequences. It offers a palette of markers to highlight important regions in the alignment. ESPript can also paste information on residue conservation into coordinate files, for subsequent visualization with a graphics program. AVAILABILITY: ESPript can be accessed on its Web site at http://www.ipbs.fr/ESPript. Sources and helpfiles can be downloaded via anonymous ftp from ftp.ipbs.fr. A tar file is held in the directory pub/ESPript. |
| spellingShingle | Gouet, P Courcelle, E Stuart, D Métoz, F ESPript: analysis of multiple sequence alignments in PostScript. |
| title | ESPript: analysis of multiple sequence alignments in PostScript. |
| title_full | ESPript: analysis of multiple sequence alignments in PostScript. |
| title_fullStr | ESPript: analysis of multiple sequence alignments in PostScript. |
| title_full_unstemmed | ESPript: analysis of multiple sequence alignments in PostScript. |
| title_short | ESPript: analysis of multiple sequence alignments in PostScript. |
| title_sort | espript analysis of multiple sequence alignments in postscript |
| work_keys_str_mv | AT gouetp espriptanalysisofmultiplesequencealignmentsinpostscript AT courcellee espriptanalysisofmultiplesequencealignmentsinpostscript AT stuartd espriptanalysisofmultiplesequencealignmentsinpostscript AT metozf espriptanalysisofmultiplesequencealignmentsinpostscript |