Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships.

Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships.

Show other versions (2)

Phylogenetic analysis has been extensively used as a tool for the reconstruction of epidemiological relations for research or for forensic purposes. It was our objective to assess the sensitivity of different phylogenetic methods and various phylogenetic programs to reconstruct epidemiological links...

Deskribapen osoa

Xehetasun bibliografikoak
Egile Nagusiak:	Beloukas, A, Magiorkinis, E, Magiorkinis, G, Zavitsanou, A, Karamitros, T, Hatzakis, A, Paraskevis, D
Formatua:	Journal article
Hizkuntza:	English
Argitaratua:	2012

Antzeko izenburuak

Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships
nork: Beloukas, A, et al.
Argitaratua: (2012)

Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships
nork: Beloukas, A, et al.
Argitaratua: (2012)

The phylogenetic information profile of HIV-1 and the degradation effect of recombination.
nork: Magiorkinis, G, et al.
Argitaratua: (2008)

Phylogenetic reconstruction of a known HIV-1 CRF04_cpx transmission network using maximum likelihood and Bayesian methods.
nork: Paraskevis, D, et al.
Argitaratua: (2004)

Analysing the evolutionary history of HCV: puzzle of ancient phylogenetic discordance.
nork: Magiorkinis, G, et al.
Argitaratua: (2007)

Re-analysis of 34 full-length HIV-1 intersubtype recombinant sequences
nork: Magiorkinis, G, et al.
Argitaratua: (2005)

Re-analysis of 34 full-length HIV-1 intersubtype recombinant sequences.
nork: Magiorkinis, G, et al.
Argitaratua: (2005)

Comments on "the distribution of HIV-1 recombination breakpoints" by Jun Fan, Matteo Negroni, David L. Robertson.
nork: Magiorkinis, G, et al.
Argitaratua: (2008)

Reanalysis of the HIV-1 circulating recombinant form A/E (CRF01_AE): evidence of A/E/G recombination.
nork: Magiorkinis, G, et al.
Argitaratua: (2002)

Phylogenetic analysis of the full-length SARS-CoV sequences: evidence for phylogenetic discordance in three genomic regions.
nork: Magiorkinis, G, et al.
Argitaratua: (2004)

Re-analysis of a human hepatitis B virus (HBV) isolate from an East African wild born Pan troglodytes schweinfurthii: evidence for interspecies recombination between HBV infecting chimpanzee and human.
nork: Magiorkinis, E, et al.
Argitaratua: (2005)

An innovative study design to assess the community effect of interventions to mitigate HIV epidemics using transmission-chain phylodynamics
nork: Magiorkinis, G, et al.
Argitaratua: (2018)

Hepatitis B virus (HBV) genotypes: From epidemiology to clinical practice
nork: Magiorkinis, E, et al.
Argitaratua: (2007)

Molecular characterization of complex, recombinant human immunodeficiency virus type 1 (HIV-1) isolate (A/G/J/K/?): Evidence to support the existence of a novel HIV-1 subtype
nork: Paraskevis, D, et al.
Argitaratua: (2001)

Molecular characterization of a complex, recombinant human immunodeficiency virus type 1 (HIV-1) isolate (A/G/J/K/?): evidence to support the existence of a novel HIV-1 subtype.
nork: Paraskevis, D, et al.
Argitaratua: (2001)

In vivo characteristics of human immunodeficiency virus type 1 intersubtype recombination: determination of hot spots and correlation with sequence similarity.
nork: Magiorkinis, G, et al.
Argitaratua: (2003)

A contaminant-free assessment of Endogenous Retroviral RNA in human plasma
nork: Karamitros, T, et al.
Argitaratua: (2016)

Impact of Interferon-α Receptor-1 Promoter Polymorphisms on the Transcriptome of the Hepatitis B Virus-Associated Hepatocellular Carcinoma
nork: Timokratis Karamitros, et al.
Argitaratua: (2018-04-01)

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
nork: Paraskevis, D, et al.
Argitaratua: (2005)

Integrating phylodynamics and epidemiology to estimate transmission diversity in viral epidemics
nork: Magiorkinis, G, et al.
Argitaratua: (2013)

The interferon receptor-1 promoter polymorphisms affect the outcome of Caucasians with HBeAg-negative chronic HBV infection
nork: Karamitros, T, et al.
Argitaratua: (2015)

Impact of interferon-alpha receptor-1 promoter polymorphisms on the transcriptome of the hepatitis B virus-associated hepatocellular carcinoma
nork: Karamitros, T, et al.
Argitaratua: (2018)

Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects
nork: Vasylyeva, T, et al.
Argitaratua: (2016)

The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis.
nork: Magiorkinis, G, et al.
Argitaratua: (2009)

The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis
nork: Magiorkinis, G, et al.
Argitaratua: (2009)

Dating the origin and dispersal of hepatitis B virus infection in humans and primates
nork: Paraskevis, D, et al.
Argitaratua: (2013)

Dating the origin and dispersal of hepatitis B virus infection in humans and primates.
nork: Paraskevis, D, et al.
Argitaratua: (2013)

The impact of primary prevention and treatment as prevention in controlling the epidemic of hepatitis C under the new therapeutic options
nork: Sypsa, V, et al.
Argitaratua: (2012)

Quantitative detection of the M204V hepatitis B virus minor variants by amplification refractory mutation system real-time PCR combined with molecular beacon technology.
nork: Ntziora, F, et al.
Argitaratua: (2009)

Integrating phylodynamics and epidemiology to estimate transmission diversity in viral epidemics.
nork: Gkikas Magiorkinis, et al.
Argitaratua: (2013-01-01)

Mutations associated with genotypic resistance to antiretroviral therapy in treatment naive HIV-1 infected patients in Greece.
nork: Magiorkinis, E, et al.
Argitaratua: (2002)

A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits
nork: Karamitros, T, et al.
Argitaratua: (2015)

Integrating molecular epidemiology and social network analysis to study infectious diseases: towards a socio-molecular era for public health
nork: Vasylyeva, T, et al.
Argitaratua: (2016)

In vivo characteristics of human immunodeficiency virus type 1 intersubtype recombination: Determination of hot spots and correlation with sequence similarity
nork: Magiorkinis, G, et al.
Argitaratua: (2003)

Superspreading and transmission variation in HCV epidemics
nork: Magiorkinis, G, et al.
Argitaratua: (2012)

The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis.
nork: Gkikas Magiorkinis, et al.
Argitaratua: (2009-12-01)

Appearance of a single amino acid insertion at position 33 in HIV type 1 protease under a lopinavir-containing regimen, associated with reduced protease inhibitor susceptibility.
nork: Magiorkinis, E, et al.
Argitaratua: (2011)

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.
nork: Vasylyeva, TI, et al.
Argitaratua: (2018)

Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects.
nork: Vasylyeva, TI, et al.
Argitaratua: (2016)

In vitro hepatitis C virus replication systems and novel therapeutic agents for chronic hepatitis C
nork: Ntziora, F, et al.
Argitaratua: (2006)