Individual-based and continuum models of growing cell populations: a comparison.
In this paper we compare two alternative theoretical approaches for simulating the growth of cell aggregates in vitro: individual cell (agent)-based models and continuum models. We show by a quantitative analysis of both a biophysical agent-based and a continuum mechanical model that for densely pac...
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| Format: | Journal article |
| Language: | English |
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2009
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| _version_ | 1797102207418499072 |
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| author | Byrne, H Drasdo, D |
| author_facet | Byrne, H Drasdo, D |
| author_sort | Byrne, H |
| collection | OXFORD |
| description | In this paper we compare two alternative theoretical approaches for simulating the growth of cell aggregates in vitro: individual cell (agent)-based models and continuum models. We show by a quantitative analysis of both a biophysical agent-based and a continuum mechanical model that for densely packed aggregates the expansion of the cell population is dominated by cell proliferation controlled by mechanical stress. The biophysical agent-based model introduced earlier (Drasdo and Hoehme in Phys Biol 2:133-147, 2005) approximates each cell as an isotropic, homogeneous, elastic, spherical object parameterised by measurable biophysical and cell-biological quantities and has been shown by comparison to experimental findings to explain the growth patterns of dense monolayers and multicellular spheroids. Both models exhibit the same growth kinetics, with initial exponential growth of the population size and aggregate diameter followed by linear growth of the diameter and power-law growth of the cell population size. Very sparse monolayers can be explained by a very small or absent cell-cell adhesion and large random cell migration. In this case the expansion speed is not controlled by mechanical stress but by random cell migration and can be modelled by the Fisher-Kolmogorov-Petrovskii-Piskounov (FKPP) reaction-diffusion equation. The growth kinetics differs from that of densely packed aggregates in that the initial spread, as quantified by the radius of gyration, is diffusive. Since simulations of the lattice-free agent-based model in the case of very large random migration are too long to be practical, lattice-based cellular automaton (CA) models have to be used for a quantitative analysis of sparse monolayers. Analysis of these dense monolayers leads to the identification of a critical parameter of the CA model so that eventually a hierarchy of three model types (a detailed biophysical lattice-free model, a rule-based cellular automaton and a continuum approach) emerge which yield the same growth pattern for dense and sparse cell aggregates. |
| first_indexed | 2024-03-07T06:02:41Z |
| format | Journal article |
| id | oxford-uuid:ecbfaa13-6a38-41cc-8568-8c3e692aceda |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-07T06:02:41Z |
| publishDate | 2009 |
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| spelling | oxford-uuid:ecbfaa13-6a38-41cc-8568-8c3e692aceda2022-03-27T11:19:50ZIndividual-based and continuum models of growing cell populations: a comparison.Journal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:ecbfaa13-6a38-41cc-8568-8c3e692acedaEnglishSymplectic Elements at Oxford2009Byrne, HDrasdo, DIn this paper we compare two alternative theoretical approaches for simulating the growth of cell aggregates in vitro: individual cell (agent)-based models and continuum models. We show by a quantitative analysis of both a biophysical agent-based and a continuum mechanical model that for densely packed aggregates the expansion of the cell population is dominated by cell proliferation controlled by mechanical stress. The biophysical agent-based model introduced earlier (Drasdo and Hoehme in Phys Biol 2:133-147, 2005) approximates each cell as an isotropic, homogeneous, elastic, spherical object parameterised by measurable biophysical and cell-biological quantities and has been shown by comparison to experimental findings to explain the growth patterns of dense monolayers and multicellular spheroids. Both models exhibit the same growth kinetics, with initial exponential growth of the population size and aggregate diameter followed by linear growth of the diameter and power-law growth of the cell population size. Very sparse monolayers can be explained by a very small or absent cell-cell adhesion and large random cell migration. In this case the expansion speed is not controlled by mechanical stress but by random cell migration and can be modelled by the Fisher-Kolmogorov-Petrovskii-Piskounov (FKPP) reaction-diffusion equation. The growth kinetics differs from that of densely packed aggregates in that the initial spread, as quantified by the radius of gyration, is diffusive. Since simulations of the lattice-free agent-based model in the case of very large random migration are too long to be practical, lattice-based cellular automaton (CA) models have to be used for a quantitative analysis of sparse monolayers. Analysis of these dense monolayers leads to the identification of a critical parameter of the CA model so that eventually a hierarchy of three model types (a detailed biophysical lattice-free model, a rule-based cellular automaton and a continuum approach) emerge which yield the same growth pattern for dense and sparse cell aggregates. |
| spellingShingle | Byrne, H Drasdo, D Individual-based and continuum models of growing cell populations: a comparison. |
| title | Individual-based and continuum models of growing cell populations: a comparison. |
| title_full | Individual-based and continuum models of growing cell populations: a comparison. |
| title_fullStr | Individual-based and continuum models of growing cell populations: a comparison. |
| title_full_unstemmed | Individual-based and continuum models of growing cell populations: a comparison. |
| title_short | Individual-based and continuum models of growing cell populations: a comparison. |
| title_sort | individual based and continuum models of growing cell populations a comparison |
| work_keys_str_mv | AT byrneh individualbasedandcontinuummodelsofgrowingcellpopulationsacomparison AT drasdod individualbasedandcontinuummodelsofgrowingcellpopulationsacomparison |