Community standards for open cell migration data
Cell migration research has become a high-content field. However, the quantitative information encapsulated in these complex and high-dimensional datasets is not fully exploited owing to the diversity of experimental protocols and non-standardized output formats. In addition, typically the datasets...
| Main Authors: | , , , , , |
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| Format: | Journal article |
| Language: | English |
| Published: |
Oxford University Press
2020
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| _version_ | 1797102857037545472 |
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| author | Gonzalez-Beltran, AN Masuzzo, P Ampe, C Rocca-Serra, P Sansone, S Et al. |
| author_facet | Gonzalez-Beltran, AN Masuzzo, P Ampe, C Rocca-Serra, P Sansone, S Et al. |
| author_sort | Gonzalez-Beltran, AN |
| collection | OXFORD |
| description | Cell migration research has become a high-content field. However, the quantitative information encapsulated in these complex and high-dimensional datasets is not fully exploited owing to the diversity of experimental protocols and non-standardized output formats. In addition, typically the datasets are not open for reuse. Making the data open and Findable, Accessible, Interoperable, and Reusable (FAIR) will enable meta-analysis, data integration, and data mining. Standardized data formats and controlled vocabularies are essential for building a suitable infrastructure for that purpose but are not available in the cell migration domain. We here present standardization efforts by the Cell Migration Standardisation Organisation (CMSO), an open community-driven organization to facilitate the development of standards for cell migration data. This work will foster the development of improved algorithms and tools and enable secondary analysis of public datasets, ultimately unlocking new knowledge of the complex biological process of cell migration. |
| first_indexed | 2024-03-07T06:11:45Z |
| format | Journal article |
| id | oxford-uuid:efbe3880-af22-49f7-9823-9d7cac895854 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-07T06:11:45Z |
| publishDate | 2020 |
| publisher | Oxford University Press |
| record_format | dspace |
| spelling | oxford-uuid:efbe3880-af22-49f7-9823-9d7cac8958542022-03-27T11:42:29ZCommunity standards for open cell migration dataJournal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:efbe3880-af22-49f7-9823-9d7cac895854EnglishSymplectic ElementsOxford University Press2020Gonzalez-Beltran, ANMasuzzo, PAmpe, CRocca-Serra, PSansone, SEt al.Cell migration research has become a high-content field. However, the quantitative information encapsulated in these complex and high-dimensional datasets is not fully exploited owing to the diversity of experimental protocols and non-standardized output formats. In addition, typically the datasets are not open for reuse. Making the data open and Findable, Accessible, Interoperable, and Reusable (FAIR) will enable meta-analysis, data integration, and data mining. Standardized data formats and controlled vocabularies are essential for building a suitable infrastructure for that purpose but are not available in the cell migration domain. We here present standardization efforts by the Cell Migration Standardisation Organisation (CMSO), an open community-driven organization to facilitate the development of standards for cell migration data. This work will foster the development of improved algorithms and tools and enable secondary analysis of public datasets, ultimately unlocking new knowledge of the complex biological process of cell migration. |
| spellingShingle | Gonzalez-Beltran, AN Masuzzo, P Ampe, C Rocca-Serra, P Sansone, S Et al. Community standards for open cell migration data |
| title | Community standards for open cell migration data |
| title_full | Community standards for open cell migration data |
| title_fullStr | Community standards for open cell migration data |
| title_full_unstemmed | Community standards for open cell migration data |
| title_short | Community standards for open cell migration data |
| title_sort | community standards for open cell migration data |
| work_keys_str_mv | AT gonzalezbeltranan communitystandardsforopencellmigrationdata AT masuzzop communitystandardsforopencellmigrationdata AT ampec communitystandardsforopencellmigrationdata AT roccaserrap communitystandardsforopencellmigrationdata AT sansones communitystandardsforopencellmigrationdata AT etal communitystandardsforopencellmigrationdata |