Use of genome wide expression profiles in analysis of T cell dysfunction in Hepatitis C virus infection

<p>During the course of infection with chronic pathogens such as Hepatitis C virus (HCV), Hepatitis B virus (HBV) and HIV, virus-specific CD8<sup>&amp;plus;</sup> T cells differentiate into heterogeneous dysfunctional subpopulations. Advances in multi-parameter flow cytometry h...

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书目详细资料
主要作者: Gupta, P
其他作者: Klenerman, P
格式: Thesis
语言:English
出版: 2014
主题:
实物特征
总结:<p>During the course of infection with chronic pathogens such as Hepatitis C virus (HCV), Hepatitis B virus (HBV) and HIV, virus-specific CD8<sup>&amp;plus;</sup> T cells differentiate into heterogeneous dysfunctional subpopulations. Advances in multi-parameter flow cytometry have allowed these subpopulations to be further classified into classes of exhausted T cells, primarily by their expression of multiple inhibitory receptors. However, the exact phenotype of CD8<sup>&amp;plus;</sup> T cells during exhaustion is an area of great interest as many inhibitory receptors are also expressed on functional CD8<sup>&amp;plus;</sup> T cells. Discovering novel and specific markers of T cell exhaustion is fundamental in developing strategies to restore CD8<sup>&amp;plus;</sup> T cell function in chronic viral infections. Recently, genome wide expression profiles have identified broad molecular phenotypes in exhausted T cells that could not have been discovered by flow cytometry alone. I show how similar genomic approaches identify and further characterise the ectonucleotidase CD39 as a novel marker of CD8<sup>&amp;plus;</sup> T cell exhaustion in chronic viral infection. I show that CD39 is highly expressed in HCV and HIV-specific CD8<sup>&amp;plus;</sup> T cells and that CD39<sup>&amp;plus;</sup> CD8<sup>&amp;plus;</sup> T cells are enriched with gene signatures of exhaustion. CD39 is highly co-expressed with multiple inhibitory receptors including PD-1, enzymatically active on CD8<sup>&amp;plus;</sup> T cells in HCV infection and positively correlated with viral load in both HCV and HIV. I also demonstrate the discovery of a novel CD39<sup>High</sup> population of cells in the mouse model of chronic Lymphocytic Choriomenigitis Virus (LCMV) infection, which express the highest degrees of PD-1, LAG3 and 2B4 in the CD39<sup>&amp;plus;</sup> fraction. Thus, CD39 is a novel and specific marker of severe CD8<sup>&amp;plus;</sup> T cell exhaustion in human and animal models of chronic viral infection.</p>