Affymetrix GeneChip system: moving from research to the clinic.

Affymetrix GeneChip system: moving from research to the clinic.

Affymetrix Inc.'s GeneChip technology has become the industry standard in microarray-based research. Due to the high density of content per array that can be achieved today (an industry leading 6.5 million features) the GeneChips can be used for high-throughput mutation detection, single nucleo...

Deskribapen osoa

Xehetasun bibliografikoak
Egile Nagusiak:	Ragoussis, J, Elvidge, G
Formatua:	Journal article
Hizkuntza:	English
Argitaratua:	2006

Antzeko izenburuak

Assessing affymetrix GeneChip microarray quality
nork: Lukk Margus, et al.
Argitaratua: (2011-05-01)

Using surveys of Affymetrix GeneChips to study antisense expression
nork: Sanchez-Graillet Olivia, et al.
Argitaratua: (2010-06-01)

Analysis of Affymetrix GeneChip® data using amplified RNA
nork: Leslie Cope, et al.
Argitaratua: (2006-02-01)

Comparison of target labeling methods for use with Affymetrix GeneChips
nork: Vernon Suzanne D, et al.
Argitaratua: (2007-05-01)

Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
nork: Johnston Caroline E, et al.
Argitaratua: (2007-06-01)

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips
nork: Asgharnegad Lida, et al.
Argitaratua: (2005-06-01)

Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
nork: Harrison Andrew P, et al.
Argitaratua: (2007-01-01)

SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
nork: Takada Toyoyuki, et al.
Argitaratua: (2009-05-01)

Uncovering the expression patterns of chimeric transcripts using surveys of Affymetrix GeneChips
nork: Rowsell Joanna, et al.
Argitaratua: (2010-12-01)

Widespread existence of uncorrelated probe intensities from within the same probeset on Affymetrix GeneChips
nork: Sanchez-Graillet Olivia, et al.
Argitaratua: (2008-06-01)

Coverage and characteristics of the Affymetrix GeneChip Human Mapping 100K SNP set.
Argitaratua: (2006-05-01)

A statistical framework for consolidating "sibling" probe sets for Affymetrix GeneChip data
nork: Zhu Dongxiao, et al.
Argitaratua: (2008-04-01)

Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data
nork: Augood Sarah J, et al.
Argitaratua: (2006-04-01)

A Comparative Study of the Impact of G-Stack Probes on Various Affymetrix GeneChips of Mammalia
nork: Farhat Naureen Memon, et al.
Argitaratua: (2010-01-01)

Experimental comparison and evaluation of the Affymetrix exon and U133Plus2 GeneChip arrays.
nork: Diana Abdueva, et al.
Argitaratua: (2007-09-01)

Quality assessment of buccal versus blood genomic DNA using the Affymetrix 500 K GeneChip
nork: Martin Lisa J, et al.
Argitaratua: (2007-11-01)

SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data
nork: Pearson John V, et al.
Argitaratua: (2005-10-01)

Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interest
nork: Ernur Saka, et al.
Argitaratua: (2017-12-01)

Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
nork: Zhu Qianqian, et al.
Argitaratua: (2010-05-01)

AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip™ expression arrays with respect to SNPs
nork: Weller Jennifer W, et al.
Argitaratua: (2007-07-01)

Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array
nork: Settles Matthew L, et al.
Argitaratua: (2009-05-01)

On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation
nork: Eisenhaber Frank, et al.
Argitaratua: (2008-06-01)

Use of the Affymetrix Human GeneChip array and genomic DNA hybridisation probe selection to study ovine transcriptomes
nork: N.S. Graham, et al.
Argitaratua: (2011-01-01)

Utilization of AFFX spike-in control probes to monitor sample identity throughout Affymetrix GeneChip Array processing
nork: Michael Walter, et al.
Argitaratua: (2010-05-01)

Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
nork: Dabrowski Michal, et al.
Argitaratua: (2010-02-01)

Comparing gene discovery from Affymetrix GeneChip microarrays and Clontech PCR-select cDNA subtraction: a case study
nork: Wright Paul S, et al.
Argitaratua: (2004-04-01)

Dissecting an alternative splicing analysis workflow for GeneChip<sup>® </sup>Exon 1.0 ST Affymetrix arrays
nork: Calogero Raffaele A, et al.
Argitaratua: (2008-11-01)

Gene expression profiling of chromophobe renal cell carcinomas and renal oncocytomas by Affymetrix GeneChip using pooled and individual tumours
nork: Maria V. Yusenko, Dmitry Zubakov, Gyula Kovacs
Argitaratua: (2009-01-01)

Evaluation of gene expression data generated from expired Affymetrix GeneChip<sup>®</sup> microarrays using MAQC reference RNA samples
nork: Tong Weida, et al.
Argitaratua: (2010-10-01)

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments
nork: Consiglio Arianna, et al.
Argitaratua: (2012-03-01)

A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
nork: Tripputi Mark, et al.
Argitaratua: (2006-10-01)

GCOD - GeneChip Oncology Database
nork: Gusenleitner Daniel, et al.
Argitaratua: (2011-02-01)

Washing scaling of GeneChip microarray expression
nork: Krohn Knut, et al.
Argitaratua: (2010-05-01)

The chemiluminescence based Ziplex<sup>® </sup>automated workstation focus array reproduces ovarian cancer Affymetrix GeneChip<sup>® </sup>expression profiles
nork: Provencher Diane, et al.
Argitaratua: (2009-07-01)

Genome-wide loss of heterozygosity and copy number alteration in esophageal squamous cell carcinoma using the Affymetrix GeneChip Mapping 10 K array
nork: Goldstein Alisa M, et al.
Argitaratua: (2006-11-01)

MC3T3 osteoblast-like cells cultured at alkaline pH: Microarray data (Affymetrix GeneChip Mouse 2.0 ST)
nork: Anne-Marie Galow, et al.
Argitaratua: (2017-08-01)

Estimating RNA-quality using GeneChip microarrays
nork: Fasold Mario, et al.
Argitaratua: (2012-05-01)

"Hook"-calibration of GeneChip-microarrays: Theory and algorithm
nork: Preibisch Stephan, et al.
Argitaratua: (2008-08-01)

"Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures
nork: Krohn Knut, et al.
Argitaratua: (2008-08-01)

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples
nork: Kaput Jim, et al.
Argitaratua: (2008-08-01)