A coalescent-based method for detecting and estimating recombination from gene sequences.

A coalescent-based method for detecting and estimating recombination from gene sequences.

Determining the amount of recombination in the genealogical history of a sample of genes is important to both evolutionary biology and medical population genetics. However, recurrent mutation can produce patterns of genetic diversity similar to those generated by recombination and can bias estimates...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	McVean, G, Awadalla, P, Fearnhead, P
Fformat:	Journal article
Iaith:	English
Cyhoeddwyd:	2002

Eitemau Tebyg

Approximating the coalescent with recombination.
gan: Mcvean, G, et al.
Cyhoeddwyd: (2005)

Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots.
gan: Fearnhead, P, et al.
Cyhoeddwyd: (2004)

Recombination rate estimation in the presence of hotspots.
gan: Auton, A, et al.
Cyhoeddwyd: (2007)

Estimating recombination rates from genetic variation in humans.
gan: Auton, A, et al.
Cyhoeddwyd: (2012)

Estimating recombination rates from population-genetic data.
gan: Stumpf, M, et al.
Cyhoeddwyd: (2003)

Efficient coalescent simulation and genealogical analysis for large sample sizes
gan: Kelleher, J, et al.
Cyhoeddwyd: (2015)

Estimating diversifying selection and functional constraint in the presence of recombination.
gan: Wilson, D, et al.
Cyhoeddwyd: (2006)

Linkage Disequilibrium, Recombination and Selection
gan: McVean, G
Cyhoeddwyd: (2008)

Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes.
gan: Jerome Kelleher, et al.
Cyhoeddwyd: (2016-05-01)

What drives recombination hotspots to repeat DNA in humans?
gan: McVean, G
Cyhoeddwyd: (2010)

A common sequence motif associated with recombination hot spots and genome instability in humans.
gan: Myers, S, et al.
Cyhoeddwyd: (2008)

A common sequence motif associated with recombination hot spots and genome instability in humans.
gan: Myers, S, et al.
Cyhoeddwyd: (2008)

Approximate likelihood methods for estimating local recombination rates
gan: Fearnhead, P, et al.
Cyhoeddwyd: (2002)

Recombination hotspots and population structure in Plasmodium falciparum.
gan: Mu, J, et al.
Cyhoeddwyd: (2005)

Recombination Rates, their local variation and the estimated number of hotspots in the human genome.
gan: Stumpf, M, et al.
Cyhoeddwyd: (2003)

Importance sampling on the coalescent with recombination
gan: Jenkins, P, et al.
Cyhoeddwyd: (2008)

Human genome sequence variation and the influence of gene history, mutation and recombination.
gan: Reich, D, et al.
Cyhoeddwyd: (2002)

Estimating meiotic gene conversion rates from population genetic data.
gan: Gay, J, et al.
Cyhoeddwyd: (2007)

Estimating recombination rates from population genetic data.
gan: Fearnhead, P, et al.
Cyhoeddwyd: (2001)

Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
gan: Posada David, et al.
Cyhoeddwyd: (2007-11-01)

A fine-scale map of recombination rates and hotspots across the human genome.
gan: Myers, S, et al.
Cyhoeddwyd: (2005)

Recombination hotspots and population structure in Plasmodium falciparum.
gan: Jianbing Mu, et al.
Cyhoeddwyd: (2005-10-01)

Estimating Selection Coefficients in Spatially Structured Populations from Time Series Data of Allele Frequencies
gan: Mathieson, I, et al.
Cyhoeddwyd: (2013)

Estimating selection coefficients in spatially structured populations from time series data of allele frequencies.
gan: Mathieson, I, et al.
Cyhoeddwyd: (2013)

Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination.
gan: Myers, S, et al.
Cyhoeddwyd: (2010)

A statistical method for predicting classical HLA alleles from SNP data.
gan: Leslie, S, et al.
Cyhoeddwyd: (2008)

The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis.
gan: Jolley, K, et al.
Cyhoeddwyd: (2005)

THE LIMITATIONS OF VARIANT CALLING ALGORITHMS FOR CLASSICAL HLA GENES FROM WHOLE GENOME SEQUENCE DATA
gan: Cox, C, et al.
Cyhoeddwyd: (2012)

On recombination-induced multiple and simultaneous coalescent events.
gan: Davies, J, et al.
Cyhoeddwyd: (2007)

The distribution and causes of meiotic recombination in the human genome.
gan: Myers, S, et al.
Cyhoeddwyd: (2006)

Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data.
gan: Zhu, S, et al.
Cyhoeddwyd: (2017)

Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination.
gan: Fangfang Guo, et al.
Cyhoeddwyd: (2022-08-01)

The influence of recombination on human genetic diversity.
gan: Spencer, C, et al.
Cyhoeddwyd: (2006)

The influence of recombination on human genetic diversity.
gan: Spencer, C, et al.
Cyhoeddwyd: (2006)

Towards an integrated framework for detection of insertions and deletions of transposable elements in next generation sequencing data
gan: Kanapin, A, et al.
Cyhoeddwyd: (2013)

Dating genomic variants and shared ancestry in population-scale sequencing data.
gan: Patrick K Albers, et al.
Cyhoeddwyd: (2020-01-01)

Recombination hotspots and population structure in Plasmodium falciparum.
gan: Mu, J, et al.
Cyhoeddwyd: (2005)

Accurate Computation of Likelihoods in the Coalescent with Recombination via Parsimony.
gan: Lyngsø, R, et al.
Cyhoeddwyd: (2008)

Inferring coalescence times from DNA sequence data.
gan: Tavaré, S, et al.
Cyhoeddwyd: (1997)

The coalescent with gene conversion.
gan: Wiuf, C, et al.
Cyhoeddwyd: (2000)