Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium
Pectobacterium carotovorum M022 T has been isolated from a waterfall source in Selangor district (Malaysia). Using genomic and phenotypic tests, we re-examined the taxonomical position of this strain. Based on 14 concatenated housekeeping genes (fusA, rpoD, rpoS, acnA, purA, gyrB, recA, mdh, mtlD, g...
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| Format: | Article |
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Society for General Microbiology
2019
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| author | Oulghazi, Said Cigna, Jérémy Lau, Yin Yin Moumni, Mohieddine Chan, Kok Gan Faure, Denis |
| author_facet | Oulghazi, Said Cigna, Jérémy Lau, Yin Yin Moumni, Mohieddine Chan, Kok Gan Faure, Denis |
| author_sort | Oulghazi, Said |
| collection | UM |
| description | Pectobacterium carotovorum M022 T has been isolated from a waterfall source in Selangor district (Malaysia). Using genomic and phenotypic tests, we re-examined the taxonomical position of this strain. Based on 14 concatenated housekeeping genes (fusA, rpoD, rpoS, acnA, purA, gyrB, recA, mdh, mtlD, groEL, secY, glyA, gapA and rplB), multi-locus sequence analysis revealed that strain M022 T falls into a novel clade separated from the other Pectobacterium species. The in silico DNA-DNA hybridization and average nucleotide identity values were lower than the 70 and 95% threshold values, respectively. In addition, by combining genomic and phenotypic tests, strain M022 T may be distinguished from the other Pectobacterium isolates by its incapacity to grow on D(+)-xylose, L-rhamnose, cellobiose and lactose. Strain M022 T (=CFBP 8629T=LMG 30744 T ) is proposed as the type strain of the Pectobacterium fontis sp. nov. © 2019 IUMS. |
| first_indexed | 2024-03-06T06:00:51Z |
| format | Article |
| id | um.eprints-23776 |
| institution | Universiti Malaya |
| last_indexed | 2024-03-06T06:00:51Z |
| publishDate | 2019 |
| publisher | Society for General Microbiology |
| record_format | dspace |
| spelling | um.eprints-237762020-02-13T02:31:04Z http://eprints.um.edu.my/23776/ Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium Oulghazi, Said Cigna, Jérémy Lau, Yin Yin Moumni, Mohieddine Chan, Kok Gan Faure, Denis Q Science (General) QR Microbiology Pectobacterium carotovorum M022 T has been isolated from a waterfall source in Selangor district (Malaysia). Using genomic and phenotypic tests, we re-examined the taxonomical position of this strain. Based on 14 concatenated housekeeping genes (fusA, rpoD, rpoS, acnA, purA, gyrB, recA, mdh, mtlD, groEL, secY, glyA, gapA and rplB), multi-locus sequence analysis revealed that strain M022 T falls into a novel clade separated from the other Pectobacterium species. The in silico DNA-DNA hybridization and average nucleotide identity values were lower than the 70 and 95% threshold values, respectively. In addition, by combining genomic and phenotypic tests, strain M022 T may be distinguished from the other Pectobacterium isolates by its incapacity to grow on D(+)-xylose, L-rhamnose, cellobiose and lactose. Strain M022 T (=CFBP 8629T=LMG 30744 T ) is proposed as the type strain of the Pectobacterium fontis sp. nov. © 2019 IUMS. Society for General Microbiology 2019 Article PeerReviewed Oulghazi, Said and Cigna, Jérémy and Lau, Yin Yin and Moumni, Mohieddine and Chan, Kok Gan and Faure, Denis (2019) Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium. International Journal of Systematic and Evolutionary Microbiology, 69 (2). pp. 470-475. ISSN 1466-5026, DOI https://doi.org/10.1099/ijsem.0.003180 <https://doi.org/10.1099/ijsem.0.003180>. https://doi.org/10.1099/ijsem.0.003180 doi:10.1099/ijsem.0.003180 |
| spellingShingle | Q Science (General) QR Microbiology Oulghazi, Said Cigna, Jérémy Lau, Yin Yin Moumni, Mohieddine Chan, Kok Gan Faure, Denis Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium |
| title | Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium |
| title_full | Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium |
| title_fullStr | Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium |
| title_full_unstemmed | Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium |
| title_short | Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium |
| title_sort | transfer of the waterfall source isolate pectobacterium carotovorum m022 to pectobacterium fontis sp nov a deep branching species within the genus pectobacterium |
| topic | Q Science (General) QR Microbiology |
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