Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae)
Premise of the study: Twenty-seven nuclear microsatellite markers were developed for the mangrove fern,Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant. Methods and Results: Fifty-six A. aureum individuals from...
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| Format: | Article |
| Language: | English English |
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Botanical Society of America
2016
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| Online Access: | https://eprints.ums.edu.my/id/eprint/19357/1/Development%20and%20characterization%20of%2027.pdf https://eprints.ums.edu.my/id/eprint/19357/7/Development%20and%20characterization%20of%2027%20microsatellite.pdf |
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| author | Takashi Yamamoto Yoshiaki Tsuda Gustavo Maruyama Mori Mariana Vargas Cruz Yoshimi Shinmura Alison K. S. Wee Koji Takayama Takeshi Asakawa Takeru Yamakawa Monica Suleiman Juan Núñez-Farfán Edward L. Webb Yasuyuki Watano Tadashi Kajita |
| author_facet | Takashi Yamamoto Yoshiaki Tsuda Gustavo Maruyama Mori Mariana Vargas Cruz Yoshimi Shinmura Alison K. S. Wee Koji Takayama Takeshi Asakawa Takeru Yamakawa Monica Suleiman Juan Núñez-Farfán Edward L. Webb Yasuyuki Watano Tadashi Kajita |
| author_sort | Takashi Yamamoto |
| collection | UMS |
| description | Premise of the study:
Twenty-seven nuclear microsatellite markers were developed for the mangrove fern,Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant.
Methods and Results:
Fifty-six A. aureum individuals from three populations were sampled and genotyped to characterize the 27 loci. The number of alleles and expected heterozygosity ranged from one to 15 and 0.000 to 0.893, respectively. Across the 26 polymorphic loci, the Malaysian population showed much higher levels of polymorphism compared to the other two populations in Guam and Brazil. Cross-amplification tests in the other two species from the genus determined that seven and six loci were amplifiable in A. danaeifolium and A. speciosum, respectively.
Conclusions:
The 26 polymorphic microsatellite markers will be useful for future studies investigating the genetic structure and demographic history of of A. aureum, which has the widest distributional range of all mangrove plants. |
| first_indexed | 2024-03-06T02:55:37Z |
| format | Article |
| id | ums.eprints-19357 |
| institution | Universiti Malaysia Sabah |
| language | English English |
| last_indexed | 2024-03-06T02:55:37Z |
| publishDate | 2016 |
| publisher | Botanical Society of America |
| record_format | dspace |
| spelling | ums.eprints-193572021-01-01T10:45:03Z https://eprints.ums.edu.my/id/eprint/19357/ Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae) Takashi Yamamoto Yoshiaki Tsuda Gustavo Maruyama Mori Mariana Vargas Cruz Yoshimi Shinmura Alison K. S. Wee Koji Takayama Takeshi Asakawa Takeru Yamakawa Monica Suleiman Juan Núñez-Farfán Edward L. Webb Yasuyuki Watano Tadashi Kajita QK Botany Premise of the study: Twenty-seven nuclear microsatellite markers were developed for the mangrove fern,Acrostichum aureum (Pteridaceae), to investigate the genetic structure and demographic history of the only pantropical mangrove plant. Methods and Results: Fifty-six A. aureum individuals from three populations were sampled and genotyped to characterize the 27 loci. The number of alleles and expected heterozygosity ranged from one to 15 and 0.000 to 0.893, respectively. Across the 26 polymorphic loci, the Malaysian population showed much higher levels of polymorphism compared to the other two populations in Guam and Brazil. Cross-amplification tests in the other two species from the genus determined that seven and six loci were amplifiable in A. danaeifolium and A. speciosum, respectively. Conclusions: The 26 polymorphic microsatellite markers will be useful for future studies investigating the genetic structure and demographic history of of A. aureum, which has the widest distributional range of all mangrove plants. Botanical Society of America 2016-09 Article PeerReviewed text en https://eprints.ums.edu.my/id/eprint/19357/1/Development%20and%20characterization%20of%2027.pdf text en https://eprints.ums.edu.my/id/eprint/19357/7/Development%20and%20characterization%20of%2027%20microsatellite.pdf Takashi Yamamoto and Yoshiaki Tsuda and Gustavo Maruyama Mori and Mariana Vargas Cruz and Yoshimi Shinmura and Alison K. S. Wee and Koji Takayama and Takeshi Asakawa and Takeru Yamakawa and Monica Suleiman and Juan Núñez-Farfán and Edward L. Webb and Yasuyuki Watano and Tadashi Kajita (2016) Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae). Applications in Plant Sciences, 4 (9). p. 1600042. ISSN 2168-0450 http://doi.org/10.3732/apps.1600042 |
| spellingShingle | QK Botany Takashi Yamamoto Yoshiaki Tsuda Gustavo Maruyama Mori Mariana Vargas Cruz Yoshimi Shinmura Alison K. S. Wee Koji Takayama Takeshi Asakawa Takeru Yamakawa Monica Suleiman Juan Núñez-Farfán Edward L. Webb Yasuyuki Watano Tadashi Kajita Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae) |
| title | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae) |
| title_full | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae) |
| title_fullStr | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae) |
| title_full_unstemmed | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae) |
| title_short | Development and characterization of 27 microsatellite markers for the mangrove fern, Acrostichum aureum (Pteridaceae) |
| title_sort | development and characterization of 27 microsatellite markers for the mangrove fern acrostichum aureum pteridaceae |
| topic | QK Botany |
| url | https://eprints.ums.edu.my/id/eprint/19357/1/Development%20and%20characterization%20of%2027.pdf https://eprints.ums.edu.my/id/eprint/19357/7/Development%20and%20characterization%20of%2027%20microsatellite.pdf |
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