Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B
Parageobacillus caldoxylosilyticus , or previously identified as Geobacillus caldoxylosilyticus , is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosily...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English English |
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Elsevier Inc.
2021
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| Online Access: | https://eprints.ums.edu.my/id/eprint/32911/3/Complete%20genome%20sequence%20data%20of%20tropical%20thermophilic%20bacterium%20Parageobacillus%20caldoxylosilyticus.ABSTRACT.pdf https://eprints.ums.edu.my/id/eprint/32911/2/Complete%20genome%20sequence%20data%20of%20tropical%20thermophilic%20bacterium%20Parageobacillus%20caldoxylosilyticus%20ER4B.pdf |
| _version_ | 1825714782104190976 |
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| author | Xin, Jie Ching Nazalan Najimudin Cheah, Yoke Kqueen Wong, Clemente Michael Vui Ling |
| author_facet | Xin, Jie Ching Nazalan Najimudin Cheah, Yoke Kqueen Wong, Clemente Michael Vui Ling |
| author_sort | Xin, Jie Ching |
| collection | UMS |
| description | Parageobacillus caldoxylosilyticus , or previously identified as Geobacillus caldoxylosilyticus , is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosilyticus ER4B which was isolated from an empty oil palm fruit bunch compost in Malaysia. Whole genome sequencing was per- formed using the PacBio RSII platform. The genome size of strain ER4B was around 3.9Mbp, with GC content of 44.31%. The genome consists of two contigs, in which the larger contig (3,909,276bp) represents the chromosome, while the smaller one (54,250bp) represents the plasmid. A total of 4,164 genes were successfully predicted, including 3,972 protein coding sequences, 26 rRNAs, 91 tRNAs, 74 miscRNA, and 1 tmRNA. The genome sequence data of strain ER4B reported here may contribute to the current molecular information of the species. It may also facilitate the discovery of molecular traits related to thermal stress, thus, expanding our understanding in the acclimation or adaptation towards extreme temperature in bacteria. |
| first_indexed | 2024-03-06T03:16:54Z |
| format | Article |
| id | ums.eprints-32911 |
| institution | Universiti Malaysia Sabah |
| language | English English |
| last_indexed | 2024-03-06T03:16:54Z |
| publishDate | 2021 |
| publisher | Elsevier Inc. |
| record_format | dspace |
| spelling | ums.eprints-329112022-06-21T02:36:12Z https://eprints.ums.edu.my/id/eprint/32911/ Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B Xin, Jie Ching Nazalan Najimudin Cheah, Yoke Kqueen Wong, Clemente Michael Vui Ling QH301-705.5 Biology (General) Parageobacillus caldoxylosilyticus , or previously identified as Geobacillus caldoxylosilyticus , is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosilyticus ER4B which was isolated from an empty oil palm fruit bunch compost in Malaysia. Whole genome sequencing was per- formed using the PacBio RSII platform. The genome size of strain ER4B was around 3.9Mbp, with GC content of 44.31%. The genome consists of two contigs, in which the larger contig (3,909,276bp) represents the chromosome, while the smaller one (54,250bp) represents the plasmid. A total of 4,164 genes were successfully predicted, including 3,972 protein coding sequences, 26 rRNAs, 91 tRNAs, 74 miscRNA, and 1 tmRNA. The genome sequence data of strain ER4B reported here may contribute to the current molecular information of the species. It may also facilitate the discovery of molecular traits related to thermal stress, thus, expanding our understanding in the acclimation or adaptation towards extreme temperature in bacteria. Elsevier Inc. 2021-12-21 Article PeerReviewed text en https://eprints.ums.edu.my/id/eprint/32911/3/Complete%20genome%20sequence%20data%20of%20tropical%20thermophilic%20bacterium%20Parageobacillus%20caldoxylosilyticus.ABSTRACT.pdf text en https://eprints.ums.edu.my/id/eprint/32911/2/Complete%20genome%20sequence%20data%20of%20tropical%20thermophilic%20bacterium%20Parageobacillus%20caldoxylosilyticus%20ER4B.pdf Xin, Jie Ching and Nazalan Najimudin and Cheah, Yoke Kqueen and Wong, Clemente Michael Vui Ling (2021) Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B. Data in Brief, 40. pp. 1-7. ISSN 2352-3409 https://www.sciencedirect.com/science/article/pii/S2352340921010386 10.1016/j.dib.2021.107764 10.1016/j.dib.2021.107764 |
| spellingShingle | QH301-705.5 Biology (General) Xin, Jie Ching Nazalan Najimudin Cheah, Yoke Kqueen Wong, Clemente Michael Vui Ling Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B |
| title | Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B |
| title_full | Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B |
| title_fullStr | Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B |
| title_full_unstemmed | Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B |
| title_short | Complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus ER4B |
| title_sort | complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus er4b |
| topic | QH301-705.5 Biology (General) |
| url | https://eprints.ums.edu.my/id/eprint/32911/3/Complete%20genome%20sequence%20data%20of%20tropical%20thermophilic%20bacterium%20Parageobacillus%20caldoxylosilyticus.ABSTRACT.pdf https://eprints.ums.edu.my/id/eprint/32911/2/Complete%20genome%20sequence%20data%20of%20tropical%20thermophilic%20bacterium%20Parageobacillus%20caldoxylosilyticus%20ER4B.pdf |
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