Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago
Using partial sequences of two mitochondrial genes, cytochrome c oxidase subunit I (COI) and 12S ribosomal RNA (12S rRNA), and one nuclear gene, 28S ribosomal RNA (28S rRNA), we investigated population genetics of the holoplanktonic shrimp Lucifer hanseni Nobili, 1905 in the Indo-Malayan Archipelago...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Cambridge University Press
2017
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| Online Access: | http://psasir.upm.edu.my/id/eprint/56589/1/Phylogeography%20of%20the%20planktonic%20shrimp%20Lucifer%20hanseni%20Nobili%201905%20in%20the%20Indo-Malayan%20Archipelago.pdf |
| _version_ | 1796976509815095296 |
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| author | Noblezada, Mary Mar Miyamoto, Hiroomi Campos, Wilfredo L. Md. Yusoff, Fatimah Nishida, Shuhei |
| author_facet | Noblezada, Mary Mar Miyamoto, Hiroomi Campos, Wilfredo L. Md. Yusoff, Fatimah Nishida, Shuhei |
| author_sort | Noblezada, Mary Mar |
| collection | UPM |
| description | Using partial sequences of two mitochondrial genes, cytochrome c oxidase subunit I (COI) and 12S ribosomal RNA (12S rRNA), and one nuclear gene, 28S ribosomal RNA (28S rRNA), we investigated population genetics of the holoplanktonic shrimp Lucifer hanseni Nobili, 1905 in the Indo-Malayan Archipelago (IMA), encompassing Andaman Sea, Malacca Strait, Gulf of Thailand, Borneo Island, Philippines (hereafter collectively referred to as the Thailand-Malaysia-Philippine area: TMP), Celebes Sea (CS), and the waters near islands in the Western Pacific (WP) including Palau, Papua New Guinea and Solomon Islands. The samples from the TMP showed the highest number of haplotypes. Significant phylogeographic structure was found in the L. hanseni populations (ΦST = 0.832 for COI, 0.159 for 12S rRNA, 0.783 for 28S rRNA). The total number of haplotypes was 46 in COI, 28 in 12S rRNA and 23 in 28S rRNA. The haplotype network analyses revealed two major clades for COI (subgroups: TMP + CS, WP) and for 12S rRNA and 28S rRNA (TMP, CS + WP). The CS and WP populations appeared isolated from the TMP populations. The samples from the CS showed low genetic diversity compared with the other samples at both haplotype and nucleotide levels, suggesting that the population CS experienced bottleneck events. This is the first demonstration of significant genetic structure of a holoplanktonic metazoan in IMA, which is suggested to be synergistically influenced by historical events (vicariance) and contemporary oceanographic circulations and corroborates the results of previous studies on other benthic/demersal animals with mero-planktonic phases. |
| first_indexed | 2024-03-06T09:26:51Z |
| format | Article |
| id | upm.eprints-56589 |
| institution | Universiti Putra Malaysia |
| language | English |
| last_indexed | 2024-03-06T09:26:51Z |
| publishDate | 2017 |
| publisher | Cambridge University Press |
| record_format | dspace |
| spelling | upm.eprints-565892017-08-03T04:54:32Z http://psasir.upm.edu.my/id/eprint/56589/ Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago Noblezada, Mary Mar Miyamoto, Hiroomi Campos, Wilfredo L. Md. Yusoff, Fatimah Nishida, Shuhei Using partial sequences of two mitochondrial genes, cytochrome c oxidase subunit I (COI) and 12S ribosomal RNA (12S rRNA), and one nuclear gene, 28S ribosomal RNA (28S rRNA), we investigated population genetics of the holoplanktonic shrimp Lucifer hanseni Nobili, 1905 in the Indo-Malayan Archipelago (IMA), encompassing Andaman Sea, Malacca Strait, Gulf of Thailand, Borneo Island, Philippines (hereafter collectively referred to as the Thailand-Malaysia-Philippine area: TMP), Celebes Sea (CS), and the waters near islands in the Western Pacific (WP) including Palau, Papua New Guinea and Solomon Islands. The samples from the TMP showed the highest number of haplotypes. Significant phylogeographic structure was found in the L. hanseni populations (ΦST = 0.832 for COI, 0.159 for 12S rRNA, 0.783 for 28S rRNA). The total number of haplotypes was 46 in COI, 28 in 12S rRNA and 23 in 28S rRNA. The haplotype network analyses revealed two major clades for COI (subgroups: TMP + CS, WP) and for 12S rRNA and 28S rRNA (TMP, CS + WP). The CS and WP populations appeared isolated from the TMP populations. The samples from the CS showed low genetic diversity compared with the other samples at both haplotype and nucleotide levels, suggesting that the population CS experienced bottleneck events. This is the first demonstration of significant genetic structure of a holoplanktonic metazoan in IMA, which is suggested to be synergistically influenced by historical events (vicariance) and contemporary oceanographic circulations and corroborates the results of previous studies on other benthic/demersal animals with mero-planktonic phases. Cambridge University Press 2017 Article PeerReviewed application/pdf en http://psasir.upm.edu.my/id/eprint/56589/1/Phylogeography%20of%20the%20planktonic%20shrimp%20Lucifer%20hanseni%20Nobili%201905%20in%20the%20Indo-Malayan%20Archipelago.pdf Noblezada, Mary Mar and Miyamoto, Hiroomi and Campos, Wilfredo L. and Md. Yusoff, Fatimah and Nishida, Shuhei (2017) Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago. Journal of the Marine Biological Association of the United Kingdom, 97 (1). pp. 129-140. ISSN 0025-3154; ESSN: 1469-7769 https://www.cambridge.org/core/journals/journal-of-the-marine-biological-association-of-the-united-kingdom/article/phylogeography-of-the-planktonic-shrimp-lucifer-hanseni-nobili-1905-in-the-indo-malayan-archipelago/9FC4D87B1F78E2243BEC67E0E3F8E5D3 10.1017/S0025315416000163 |
| spellingShingle | Noblezada, Mary Mar Miyamoto, Hiroomi Campos, Wilfredo L. Md. Yusoff, Fatimah Nishida, Shuhei Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago |
| title | Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago |
| title_full | Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago |
| title_fullStr | Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago |
| title_full_unstemmed | Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago |
| title_short | Phylogeography of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago |
| title_sort | phylogeography of the planktonic shrimp lucifer hanseni nobili 1905 in the indo malayan archipelago |
| url | http://psasir.upm.edu.my/id/eprint/56589/1/Phylogeography%20of%20the%20planktonic%20shrimp%20Lucifer%20hanseni%20Nobili%201905%20in%20the%20Indo-Malayan%20Archipelago.pdf |
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