RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia
Objective: Using high-throughput RNA sequencing technology, this study aimed to sequence the transcriptome of kidney and liver tissues harvested from Peninsular Malaysia cynomolgus macaque (Macaca fascicularis). M. fascicularis are significant nonhuman primate models in the biomedical field, owing t...
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
BioMed Central
2018
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| Online Access: | http://psasir.upm.edu.my/id/eprint/73812/1/RNA.pdf |
| _version_ | 1796979636075233280 |
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| author | Uli, Joey Ee Yong, Christina Seok Yien Yeap, Swee Keong Alitheen, Noorjahan Banu Rovie-Ryan, Jeffrine J. Tan, Jeffrine J. Mat Isa, Nurulfiza Soon, Guan Tan |
| author_facet | Uli, Joey Ee Yong, Christina Seok Yien Yeap, Swee Keong Alitheen, Noorjahan Banu Rovie-Ryan, Jeffrine J. Tan, Jeffrine J. Mat Isa, Nurulfiza Soon, Guan Tan |
| author_sort | Uli, Joey Ee |
| collection | UPM |
| description | Objective: Using high-throughput RNA sequencing technology, this study aimed to sequence the transcriptome of kidney and liver tissues harvested from Peninsular Malaysia cynomolgus macaque (Macaca fascicularis). M. fascicularis are significant nonhuman primate models in the biomedical field, owing to the macaque's biological similarities with humans. The additional transcriptomic dataset will supplement the previously described Peninsular Malaysia M. fascicularis transcriptomes obtained in a past endeavour. Results: A total of 75,350,240 sequence reads were obtained via Hi-seq 2500 sequencing technology. A total of 5473 significant differentially expressed genes were called. Gene ontology functional categorisation showed that cellular process, catalytic activity, and cell part categories had the highest number of expressed genes, while the metabolic pathways category possessed the highest number of expressed genes in the KEGG pathway analysis. The additional sequence dataset will further enrich existing M. fascicularis transcriptome assemblies, and provide a dataset for further downstream studies. |
| first_indexed | 2024-03-06T10:11:47Z |
| format | Article |
| id | upm.eprints-73812 |
| institution | Universiti Putra Malaysia |
| language | English |
| last_indexed | 2024-03-06T10:11:47Z |
| publishDate | 2018 |
| publisher | BioMed Central |
| record_format | dspace |
| spelling | upm.eprints-738122021-07-17T23:34:32Z http://psasir.upm.edu.my/id/eprint/73812/ RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia Uli, Joey Ee Yong, Christina Seok Yien Yeap, Swee Keong Alitheen, Noorjahan Banu Rovie-Ryan, Jeffrine J. Tan, Jeffrine J. Mat Isa, Nurulfiza Soon, Guan Tan Objective: Using high-throughput RNA sequencing technology, this study aimed to sequence the transcriptome of kidney and liver tissues harvested from Peninsular Malaysia cynomolgus macaque (Macaca fascicularis). M. fascicularis are significant nonhuman primate models in the biomedical field, owing to the macaque's biological similarities with humans. The additional transcriptomic dataset will supplement the previously described Peninsular Malaysia M. fascicularis transcriptomes obtained in a past endeavour. Results: A total of 75,350,240 sequence reads were obtained via Hi-seq 2500 sequencing technology. A total of 5473 significant differentially expressed genes were called. Gene ontology functional categorisation showed that cellular process, catalytic activity, and cell part categories had the highest number of expressed genes, while the metabolic pathways category possessed the highest number of expressed genes in the KEGG pathway analysis. The additional sequence dataset will further enrich existing M. fascicularis transcriptome assemblies, and provide a dataset for further downstream studies. BioMed Central 2018 Article PeerReviewed text en http://psasir.upm.edu.my/id/eprint/73812/1/RNA.pdf Uli, Joey Ee and Yong, Christina Seok Yien and Yeap, Swee Keong and Alitheen, Noorjahan Banu and Rovie-Ryan, Jeffrine J. and Tan, Jeffrine J. and Mat Isa, Nurulfiza and Soon, Guan Tan (2018) RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia. BMC Research Notes, 11 (1). art. no. 923. pp. 1-6. ISSN 1756-0500 https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-018-4014-1 10.1186/s13104-018-4014-1 |
| spellingShingle | Uli, Joey Ee Yong, Christina Seok Yien Yeap, Swee Keong Alitheen, Noorjahan Banu Rovie-Ryan, Jeffrine J. Tan, Jeffrine J. Mat Isa, Nurulfiza Soon, Guan Tan RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia |
| title | RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia |
| title_full | RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia |
| title_fullStr | RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia |
| title_full_unstemmed | RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia |
| title_short | RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia |
| title_sort | rna sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque macaca fascicularis originating from peninsular malaysia |
| url | http://psasir.upm.edu.my/id/eprint/73812/1/RNA.pdf |
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