Construction of genomic library for leucosporidium antarcticum
L. antarcticum is a yeast species found in Antarctica. With special adaptation to survive in cold harsh environment of Antarctica, L. antarcticum have various potential applications like antifreeze proteins and useful features. The genome size of L. antarcticum is approximately 14 Mb. In this res...
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| Format: | Monograph |
| Language: | English |
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Universiti Sains Malaysia
2008
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| Online Access: | http://eprints.usm.my/48855/1/MUHD%20KHAIRUL%20LUQMAN%20BIN%20MUHD%20SAKAFF%20-%2024%20Pages.pdf |
| _version_ | 1797012084404256768 |
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| author | Muhd Khairul Luqman, Muhd Sakaff |
| author_facet | Muhd Khairul Luqman, Muhd Sakaff |
| author_sort | Muhd Khairul Luqman, Muhd Sakaff |
| collection | USM |
| description | L. antarcticum is a yeast species found in Antarctica. With special adaptation
to survive in cold harsh environment of Antarctica, L. antarcticum have various
potential applications like antifreeze proteins and useful features. The genome size of
L. antarcticum is approximately 14 Mb. In this research, we tried to construct a gene
library for L. antarcticum by using plasmid vector. L. antarcticum was cultivated in
YPD broth before harvested. Three methods were evaluated for DNA extraction from
L. antarcticum (Proteinaise K proteolytic lysis method, Proteinaise K + Pronase
proteolytic lysis method and also liquid nitrogen lysis method). We found that liquid
nitrogen lysis method was the best method to extract and fragmentize the L.
antarcticum DNA at the required size of 1000 bp to 1500 bp. They were then purified
to obtain DNA fragment of 1000 bp to 1500 bp. The purified DNA were repaired,
dephosphorylated and inserted into pCR®4Blunt-TOPO® DNA vector. The
recombinant plasmids were fmally transformed into Top Ten E. coli strain using heat
shock before plated on LB agar. Plasmid extractions were carried out on clones to
screen for presence of DNA insert. In conclusion, this study managed to construct a
gene library containing approximately 2976 E. coli clones which cover 31.9 % of the
whole L. antarcticum genome. |
| first_indexed | 2024-03-06T15:43:04Z |
| format | Monograph |
| id | usm.eprints-48855 |
| institution | Universiti Sains Malaysia |
| language | English |
| last_indexed | 2024-03-06T15:43:04Z |
| publishDate | 2008 |
| publisher | Universiti Sains Malaysia |
| record_format | dspace |
| spelling | usm.eprints-488552021-04-13T01:59:37Z http://eprints.usm.my/48855/ Construction of genomic library for leucosporidium antarcticum Muhd Khairul Luqman, Muhd Sakaff R Medicine (General) L. antarcticum is a yeast species found in Antarctica. With special adaptation to survive in cold harsh environment of Antarctica, L. antarcticum have various potential applications like antifreeze proteins and useful features. The genome size of L. antarcticum is approximately 14 Mb. In this research, we tried to construct a gene library for L. antarcticum by using plasmid vector. L. antarcticum was cultivated in YPD broth before harvested. Three methods were evaluated for DNA extraction from L. antarcticum (Proteinaise K proteolytic lysis method, Proteinaise K + Pronase proteolytic lysis method and also liquid nitrogen lysis method). We found that liquid nitrogen lysis method was the best method to extract and fragmentize the L. antarcticum DNA at the required size of 1000 bp to 1500 bp. They were then purified to obtain DNA fragment of 1000 bp to 1500 bp. The purified DNA were repaired, dephosphorylated and inserted into pCR®4Blunt-TOPO® DNA vector. The recombinant plasmids were fmally transformed into Top Ten E. coli strain using heat shock before plated on LB agar. Plasmid extractions were carried out on clones to screen for presence of DNA insert. In conclusion, this study managed to construct a gene library containing approximately 2976 E. coli clones which cover 31.9 % of the whole L. antarcticum genome. Universiti Sains Malaysia 2008 Monograph NonPeerReviewed application/pdf en http://eprints.usm.my/48855/1/MUHD%20KHAIRUL%20LUQMAN%20BIN%20MUHD%20SAKAFF%20-%2024%20Pages.pdf Muhd Khairul Luqman, Muhd Sakaff (2008) Construction of genomic library for leucosporidium antarcticum. Other. Universiti Sains Malaysia. (Submitted) |
| spellingShingle | R Medicine (General) Muhd Khairul Luqman, Muhd Sakaff Construction of genomic library for leucosporidium antarcticum |
| title | Construction of genomic library for leucosporidium antarcticum |
| title_full | Construction of genomic library for leucosporidium antarcticum |
| title_fullStr | Construction of genomic library for leucosporidium antarcticum |
| title_full_unstemmed | Construction of genomic library for leucosporidium antarcticum |
| title_short | Construction of genomic library for leucosporidium antarcticum |
| title_sort | construction of genomic library for leucosporidium antarcticum |
| topic | R Medicine (General) |
| url | http://eprints.usm.my/48855/1/MUHD%20KHAIRUL%20LUQMAN%20BIN%20MUHD%20SAKAFF%20-%2024%20Pages.pdf |
| work_keys_str_mv | AT muhdkhairulluqmanmuhdsakaff constructionofgenomiclibraryforleucosporidiumantarcticum |