Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding)
This study was undertaken to design a set of common primers to amplify the mitochondria DNA (mtDNA) cytochrome coxidase subunit I (COl) barcoding region of marine fish species. The primer set namely: forward primer (ST F I) "CAC AAA GAC ATC GGC ACCC" and the reverse primer (ST R3) "...
| Main Author: | |
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| Format: | Monograph |
| Language: | English |
| Published: |
Pusat Pengajian Sains Kesihatan, Universiti Sains Malaysia
2011
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| Subjects: | |
| Online Access: | http://eprints.usm.my/52794/1/LOO%20SUET%20KEE-24%20pages.pdf |
| _version_ | 1797012885545680896 |
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| author | Kee, Loo Suet |
| author_facet | Kee, Loo Suet |
| author_sort | Kee, Loo Suet |
| collection | USM |
| description | This study was undertaken to design a set of common primers to amplify the mitochondria
DNA (mtDNA) cytochrome coxidase subunit I (COl) barcoding region of marine fish species.
The primer set namely: forward primer (ST F I) "CAC AAA GAC ATC GGC ACCC" and the
reverse primer (ST R3) "AAG AAT CANG AAT AG/AG TOT TG" were able to amplify the
three species chosen for this study. The sequence data generated were compared and analysed
using the sequence of mtDNA COl gene of Gobio gobio (GenBank accession no.: AB239596)
as reference. On analysis, about 20% polymorphic positional variations were detected across
the three species. The sequence data generated were used to study their phylogenetic
relationship by constructing a rooted neighbor joining (NJ) dendrogram |
| first_indexed | 2024-03-06T15:54:15Z |
| format | Monograph |
| id | usm.eprints-52794 |
| institution | Universiti Sains Malaysia |
| language | English |
| last_indexed | 2024-03-06T15:54:15Z |
| publishDate | 2011 |
| publisher | Pusat Pengajian Sains Kesihatan, Universiti Sains Malaysia |
| record_format | dspace |
| spelling | usm.eprints-527942022-06-08T04:45:51Z http://eprints.usm.my/52794/ Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding) Kee, Loo Suet R Medicine This study was undertaken to design a set of common primers to amplify the mitochondria DNA (mtDNA) cytochrome coxidase subunit I (COl) barcoding region of marine fish species. The primer set namely: forward primer (ST F I) "CAC AAA GAC ATC GGC ACCC" and the reverse primer (ST R3) "AAG AAT CANG AAT AG/AG TOT TG" were able to amplify the three species chosen for this study. The sequence data generated were compared and analysed using the sequence of mtDNA COl gene of Gobio gobio (GenBank accession no.: AB239596) as reference. On analysis, about 20% polymorphic positional variations were detected across the three species. The sequence data generated were used to study their phylogenetic relationship by constructing a rooted neighbor joining (NJ) dendrogram Pusat Pengajian Sains Kesihatan, Universiti Sains Malaysia 2011 Monograph NonPeerReviewed application/pdf en http://eprints.usm.my/52794/1/LOO%20SUET%20KEE-24%20pages.pdf Kee, Loo Suet (2011) Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding). Other. Pusat Pengajian Sains Kesihatan, Universiti Sains Malaysia. (Submitted) |
| spellingShingle | R Medicine Kee, Loo Suet Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding) |
| title | Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding) |
| title_full | Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding) |
| title_fullStr | Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding) |
| title_full_unstemmed | Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding) |
| title_short | Molecular characterization of Selar crumeenophthabnus (ikan Lolong), Decapterus 111aruadsi (ikan Sadin) and Rastrelliger kanagurta (ikan kembong hitatn) fish species using mtDNA COI gene (DNA barcoding) |
| title_sort | molecular characterization of selar crumeenophthabnus ikan lolong decapterus 111aruadsi ikan sadin and rastrelliger kanagurta ikan kembong hitatn fish species using mtdna coi gene dna barcoding |
| topic | R Medicine |
| url | http://eprints.usm.my/52794/1/LOO%20SUET%20KEE-24%20pages.pdf |
| work_keys_str_mv | AT keeloosuet molecularcharacterizationofselarcrumeenophthabnusikanlolongdecapterus111aruadsiikansadinandrastrelligerkanagurtaikankembonghitatnfishspeciesusingmtdnacoigenednabarcoding |