Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis
In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 proteincoding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome...
| Autores principales: | , , , , , , , |
|---|---|
| Formato: | Artículo |
| Lenguaje: | English |
| Publicado: |
Taylor & Francis
2023
|
| Materias: | |
| Acceso en línea: | http://eprints.uthm.edu.my/8897/1/J15813_2a1312a3edeb59d651d494bdfa277782.pdf |
| _version_ | 1825710660036591616 |
|---|---|
| author | Marylin Miga, Marylin Miga Jahar, Puteri Nur Syahzanani Sivachandran Parimannan, Sivachandran Parimannan Heera Rajandas, Heera Rajandas Latif, Muhammad Abu Bakar Yap Jing We, Yap Jing We Shamsir, Mohd Shahir Mohd Salleh, Faezah |
| author_facet | Marylin Miga, Marylin Miga Jahar, Puteri Nur Syahzanani Sivachandran Parimannan, Sivachandran Parimannan Heera Rajandas, Heera Rajandas Latif, Muhammad Abu Bakar Yap Jing We, Yap Jing We Shamsir, Mohd Shahir Mohd Salleh, Faezah |
| author_sort | Marylin Miga, Marylin Miga |
| collection | UTHM |
| description | In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 proteincoding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome length of 15,545bp. All protein-coding genes were initiated by the typical ATN codon except nad3 and nad1, which utilizes the TTG codon. Four protein-coding genes (cox1, cox2, cox3 and nad5) are terminated by an incomplete stop codon T, while others end with either a TAA or TAG codon. The intergenic spacer region, S5, is absent in this mitogenome, supporting the lack of this region as a specific character in damselflies. Phylogenetic analysis showed that the newly sequenced E. ochracea is
phylogenetically closer to E. ornata with a high support value. |
| first_indexed | 2024-03-05T22:01:00Z |
| format | Article |
| id | uthm.eprints-8897 |
| institution | Universiti Tun Hussein Onn Malaysia |
| language | English |
| last_indexed | 2024-03-05T22:01:00Z |
| publishDate | 2023 |
| publisher | Taylor & Francis |
| record_format | dspace |
| spelling | uthm.eprints-88972023-06-18T01:33:55Z http://eprints.uthm.edu.my/8897/ Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis Marylin Miga, Marylin Miga Jahar, Puteri Nur Syahzanani Sivachandran Parimannan, Sivachandran Parimannan Heera Rajandas, Heera Rajandas Latif, Muhammad Abu Bakar Yap Jing We, Yap Jing We Shamsir, Mohd Shahir Mohd Salleh, Faezah T Technology (General) In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 proteincoding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome length of 15,545bp. All protein-coding genes were initiated by the typical ATN codon except nad3 and nad1, which utilizes the TTG codon. Four protein-coding genes (cox1, cox2, cox3 and nad5) are terminated by an incomplete stop codon T, while others end with either a TAA or TAG codon. The intergenic spacer region, S5, is absent in this mitogenome, supporting the lack of this region as a specific character in damselflies. Phylogenetic analysis showed that the newly sequenced E. ochracea is phylogenetically closer to E. ornata with a high support value. Taylor & Francis 2023 Article PeerReviewed text en http://eprints.uthm.edu.my/8897/1/J15813_2a1312a3edeb59d651d494bdfa277782.pdf Marylin Miga, Marylin Miga and Jahar, Puteri Nur Syahzanani and Sivachandran Parimannan, Sivachandran Parimannan and Heera Rajandas, Heera Rajandas and Latif, Muhammad Abu Bakar and Yap Jing We, Yap Jing We and Shamsir, Mohd Shahir and Mohd Salleh, Faezah (2023) Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis. MITOCHONDRIAL DNA PART B: RESOURCES, 8 (2). pp. 292-296. https://doi.org/10.1080/23802359.2023.2179355 |
| spellingShingle | T Technology (General) Marylin Miga, Marylin Miga Jahar, Puteri Nur Syahzanani Sivachandran Parimannan, Sivachandran Parimannan Heera Rajandas, Heera Rajandas Latif, Muhammad Abu Bakar Yap Jing We, Yap Jing We Shamsir, Mohd Shahir Mohd Salleh, Faezah Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_full | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_fullStr | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_full_unstemmed | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_short | Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis |
| title_sort | characterization of the nearly complete mitochondrial genome of ochraceous darkies euphaea ochracea selys 1859 odonata zygoptera euphaeidae and phylogenetic analysis |
| topic | T Technology (General) |
| url | http://eprints.uthm.edu.my/8897/1/J15813_2a1312a3edeb59d651d494bdfa277782.pdf |
| work_keys_str_mv | AT marylinmigamarylinmiga characterizationofthenearlycompletemitochondrialgenomeofochraceousdarkieseuphaeaochraceaselys1859odonatazygopteraeuphaeidaeandphylogeneticanalysis AT jaharputerinursyahzanani characterizationofthenearlycompletemitochondrialgenomeofochraceousdarkieseuphaeaochraceaselys1859odonatazygopteraeuphaeidaeandphylogeneticanalysis AT sivachandranparimannansivachandranparimannan characterizationofthenearlycompletemitochondrialgenomeofochraceousdarkieseuphaeaochraceaselys1859odonatazygopteraeuphaeidaeandphylogeneticanalysis AT heerarajandasheerarajandas characterizationofthenearlycompletemitochondrialgenomeofochraceousdarkieseuphaeaochraceaselys1859odonatazygopteraeuphaeidaeandphylogeneticanalysis AT latifmuhammadabubakar characterizationofthenearlycompletemitochondrialgenomeofochraceousdarkieseuphaeaochraceaselys1859odonatazygopteraeuphaeidaeandphylogeneticanalysis AT yapjingweyapjingwe characterizationofthenearlycompletemitochondrialgenomeofochraceousdarkieseuphaeaochraceaselys1859odonatazygopteraeuphaeidaeandphylogeneticanalysis AT shamsirmohdshahir characterizationofthenearlycompletemitochondrialgenomeofochraceousdarkieseuphaeaochraceaselys1859odonatazygopteraeuphaeidaeandphylogeneticanalysis AT mohdsallehfaezah characterizationofthenearlycompletemitochondrialgenomeofochraceousdarkieseuphaeaochraceaselys1859odonatazygopteraeuphaeidaeandphylogeneticanalysis |